Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001561-TA|BGIBMGA001561-PA|IPR002088|Protein
prenyltransferase, alpha subunit, IPR008940|Protein prenyltransferase
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10095.1 68414.m01138 protein prenyltransferase alpha subunit... 91 1e-18
At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta... 43 4e-04
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni... 42 8e-04
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni... 41 0.002
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ... 34 0.15
At5g23910.1 68418.m02808 kinesin motor protein-related 32 0.82
At5g24440.1 68418.m02880 RNA-binding protein, putative 31 1.1
At1g77130.1 68414.m08985 glycogenin glucosyltransferase (glycoge... 31 1.9
At4g21040.1 68417.m03043 Dof-type zinc finger domain-containing ... 30 2.5
At2g28510.1 68415.m03464 Dof-type zinc finger domain-containing ... 29 4.4
At5g04860.1 68418.m00509 expressed protein 29 5.8
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 29 5.8
At3g18660.1 68416.m02370 glycogenin glucosyltransferase (glycoge... 29 5.8
At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing ... 29 7.6
At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing ... 29 7.6
>At1g10095.1 68414.m01138 protein prenyltransferase alpha
subunit-related contains weak hit to Pfam profile
PF01239: Protein prenyltransferase alpha subunit repeat
Length = 431
Score = 91.1 bits (216), Expect = 1e-18
Identities = 47/141 (33%), Positives = 83/141 (58%), Gaps = 13/141 (9%)
Query: 73 LLLNPELNTLWNKRRDMVLR--NLLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEAILQ 130
LLL+ + T WN R+ ++ + +L + EL+L+ L+LS PK + +RRW+++ I Q
Sbjct: 128 LLLSSDFGTAWNARKLILSKKDHLSAFTEELRLSGLILSNSPKSESTWSHRRWIIKMISQ 187
Query: 131 DENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLLYIKEY 190
+ +Q ++ +E L + ++S NY +W HR WL++ + +++ + I+E
Sbjct: 188 SFST----LQEIITKESELVESIGERSKMNYRAWYHRCWLVSYM------TIEQV-IQEL 236
Query: 191 NFSERWTSKHVSDFSCFHYRQ 211
N S+RW HV+D SCFHYR+
Sbjct: 237 NKSKRWAGLHVADSSCFHYRR 257
Score = 43.6 bits (98), Expect = 3e-04
Identities = 36/181 (19%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 145 EEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFSERWTSKHVSDF 204
EE L + SP + +W+HR W++ + + + +L + KE E + ++
Sbjct: 156 EELRLSGLILSNSPKSESTWSHRRWIIKMISQSFS-TLQEIITKESELVESIGERSKMNY 214
Query: 205 SCFHYRQYCIKNVILHLNDVFWKMFQNSIEIDLRKCFVNVLLKALQNDMTLLNADDNLME 264
+++R + + + + ++ Q E++ K + + + D + +
Sbjct: 215 RAWYHRCWLVSYMTIE------QVIQ---ELNKSKRWAGLHVA----DSSCFHYRRVRAA 261
Query: 265 YSEEKLINLLLSNTRNCNCKHNNVYLCRKFEVLFRE-LVLNSELIQFYKWHESLWYHRRY 323
YS + ++ L+L + K ++ Y + +++E L N EL++ Y E+LW HRR+
Sbjct: 262 YSVDVIVRLMLKILESLYVKGSSAYDKTEARKIWKEELDWNEELVERYVGREALWLHRRF 321
Query: 324 I 324
+
Sbjct: 322 L 322
>At3g59380.1 68416.m06622 farnesyltransferase alpha subunit,
putative / FTA, putative / protein farnesyltransferase,
putative similar to farnesyltransferase alpha subunit
[GI:2246442][Pisum sativum]
Length = 326
Score = 42.7 bits (96), Expect = 4e-04
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 67 RLLSVTLLLNPELNTLWNKRRDMVLRNLL-EKSSELKLTRLVLSRKPKCNEAFGYRRWLL 125
RL TLLLN T+W+ RR +VL L + EL+ + K + + +RRW+
Sbjct: 61 RLTEETLLLNSGNYTVWHFRR-LVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVA 119
Query: 126 EAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTL 174
E + D + E + +YH+W+HR W L L
Sbjct: 120 EKLGPD----------VAGRELEFTRRVLSLDAKHYHAWSHRQWTLRAL 158
>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
subunit-related / RAB geranylgeranyltransferase alpha
subunit-related low similarity to SP|Q08602 [Rattus
norvegicus]
Length = 687
Score = 41.9 bits (94), Expect = 8e-04
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 101 LKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNN 160
++L+ +L P+ A+ Y + E+ L DE+ + + ++++EE + Q A +++ +
Sbjct: 43 IQLSAKLLITNPEFYTAWNYPKLAFESRL-DEDSDPSLVNSIIDEELGVVQNALERNVKS 101
Query: 161 YHSWNHRMWLLN 172
Y +W HR W+L+
Sbjct: 102 YGAWYHRKWVLS 113
Score = 38.7 bits (86), Expect = 0.007
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 60 IHSEKLGRLLSVTLLLNPELNTLWNKRRDMVLRNLLEKSS-----------ELKLTRLVL 108
I++++ +L + L+ NPE T WN + + + L++ S EL + + L
Sbjct: 37 IYTKEAIQLSAKLLITNPEFYTAWNYPK-LAFESRLDEDSDPSLVNSIIDEELGVVQNAL 95
Query: 109 SRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPN----NYHSW 164
R K A+ +R+W+L N +Q L + + Q D+ + N+H+W
Sbjct: 96 ERNVKSYGAWYHRKWVLSKKGHYYPSLENELQLLNDYQKQAHQKQDDEKQDDPSRNFHAW 155
Query: 165 NHRMWLLNTLKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIKNVILHLNDV 224
N+R +++ K T+ +L Y + +T +S +HYR + +++ D
Sbjct: 156 NYRRFVVELTK--TSEEDELQYTTDMISDISFTI-----YSAWHYRSVLVSSLVAKKADG 208
Query: 225 F 225
F
Sbjct: 209 F 209
>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
subunit-related / RAB geranylgeranyltransferase alpha
subunit-related low similarity to SP|Q08602 [Rattus
norvegicus]
Length = 683
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 101 LKLTRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNN 160
++L+ +L P+ A+ YR+ +E L N + +++EE + + A ++ +
Sbjct: 45 IELSTKLLEINPEAYTAWNYRKLAVEDRLARIEPDPNLVSAILDEELRVVESALRQNFKS 104
Query: 161 YHSWNHRMWLLNTLKKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIK 215
Y +W+HR W+L+ L LL E++ +F ++YR++ ++
Sbjct: 105 YGAWHHRKWVLSKGHSSVGNELRLL--------EKFQKLDSRNFHAWNYRRFVVE 151
Score = 38.7 bits (86), Expect = 0.007
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 9/158 (5%)
Query: 69 LSVTLL-LNPELNTLWNKRRDMVLRNLLEKSSELKLTRLVLSRKPKCNEAFGYRRWLLEA 127
LS LL +NPE T WN R+ V L + L +L + + E+ + +
Sbjct: 47 LSTKLLEINPEAYTAWNYRKLAVEDRLARIEPDPNLVSAILDEELRVVESALRQNFKSYG 106
Query: 128 ILQDENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTLKKITNFSLDLLYI 187
+ + V E L + N+H+WN+R +++ ++TN S
Sbjct: 107 AWHHRKWVLSKGHSSVGNELRLLEKFQKLDSRNFHAWNYRRFVV----ELTNRSEQ---- 158
Query: 188 KEYNFSERWTSKHVSDFSCFHYRQYCIKNVILHLNDVF 225
E +++ + + S++S +H R + +++ D F
Sbjct: 159 DELQYTDDMINNNFSNYSAWHNRSVLLSSLLAQNADGF 196
Score = 37.1 bits (82), Expect = 0.022
Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 57 LGSIHSEKLGRLLSVTLLLNPELNTLWNKRRDMVLRNLLEKSSELKLTRLVLSRKPKCNE 116
+ +I E+L R++ L N + W+ R+ ++ + +EL+L +
Sbjct: 83 VSAILDEEL-RVVESALRQNFKSYGAWHHRKWVLSKGHSSVGNELRLLEKFQKLDSRNFH 141
Query: 117 AFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPNNYHSWNHRMWLLNTL-- 174
A+ YRR+++E + E + Y +++N F +NY +W++R LL++L
Sbjct: 142 AWNYRRFVVELTNRSEQDELQYTDDMINNNF-----------SNYSAWHNRSVLLSSLLA 190
Query: 175 KKITNFSLDLLYIKEYNFSERWTSKHVSDFSCFHYRQYCIKNVI 218
+ F ++ +EY+F D S + Y + + +
Sbjct: 191 QNADGFMPNIKIPEEYDFVHSAIFTEPDDQSGWFYHLWLLDQTL 234
>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
protein Dof zinc finger protein, Oryza sativa,
EMBL:AB028129
Length = 372
Score = 34.3 bits (75), Expect = 0.15
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 7 VDSNFRNKTPVLHLENCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
+D R + P H + C ES K Y YS +YFCKT RR T G
Sbjct: 59 MDGGRRLRPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKG 110
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 31.9 bits (69), Expect = 0.82
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 230 QNSIEIDLRKCFVNVLLKALQNDMTLLNADDNLMEYSEEKLINLLLSNTRNCN 282
QNS L VN + ALQN M LNA+++ + Y E KL +L + N
Sbjct: 223 QNSALGPLEIARVNKSIYALQNVMYALNANESHVPYRESKLTRMLKDCLKGSN 275
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 31.5 bits (68), Expect = 1.1
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 104 TRLVLSRKPKCNEAFGYRRWLLEAILQDENLQSNYIQNLVNEEFHLCQIASDKSPN---- 159
T ++ KP C++ + ++L +E +Q NL +E HL +A + P+
Sbjct: 23 TTSLVETKPSCSDDQTPKS--KSSVLTNELIQRTSEVNLKSEISHLNPMAKEFVPSFLAQ 80
Query: 160 NYHS--WNHRMWLLNTLKKITNFSLDLLYIKEYNFSE--RWTSK 199
+HS W +R W N K T F + NF + W +K
Sbjct: 81 THHSEFWGNRFWFTNHFPKQTIFLIGQFATMRRNFGKGRPWITK 124
>At1g77130.1 68414.m08985 glycogenin glucosyltransferase
(glycogenin)-related contains similarity to glycogenin-1
from Mus musculus [SP|Q9R062], Rattus norvegicus
[SP|O08730], Homo sapiens [SP|P46976]
Length = 618
Score = 30.7 bits (66), Expect = 1.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 158 PNNYHSWNH---RMWLLNTLKKITNFSLDLLYIKEYNF 192
PN Y+ WN+ R+W L KI D+L ++ +F
Sbjct: 353 PNAYNEWNYSKFRLWQLTEYSKIIFIDADMLILRNIDF 390
>At4g21040.1 68417.m03043 Dof-type zinc finger domain-containing
protein finger protein rolB, Arabidopsis thaliana,
PID:g1359493
Length = 232
Score = 30.3 bits (65), Expect = 2.5
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 2 FDIVPVDSNFRN--KTPVLHLENCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
F++V + N N K P C +S K Y YSE +YFCK RR T G
Sbjct: 4 FNVVANEDNQVNDVKPPPPPPRVCARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHG 62
>At2g28510.1 68415.m03464 Dof-type zinc finger domain-containing
protein similar to elicitor-responsive Dof protein ERDP
GI:6092016 from [Pisum sativum]
Length = 288
Score = 29.5 bits (63), Expect = 4.4
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 21 ENCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
+NC ES K Y YS +YFCK+ RR T G
Sbjct: 48 QNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKG 85
>At5g04860.1 68418.m00509 expressed protein
Length = 782
Score = 29.1 bits (62), Expect = 5.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 330 ISMYEYFGLKKQNGALVKDNCKKCNSNDLRQKQVKI 365
+++ EYF L K++ VK K C+S+ +R V I
Sbjct: 143 LNIAEYFSLMKEDDVQVKVPLKDCDSSSVRSPHVHI 178
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 29.1 bits (62), Expect = 5.8
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 229 FQNSIEIDLRKCFVNVLLKALQNDMTLLNADDNLMEYSEEKLINLLLSNTRNCNCKHNNV 288
F +S I + F VL +AL + + D L++ + E L +LLL +TR C K +V
Sbjct: 32 FPDSSPISISNSFDRVLDRALASASADESVQDRLVDRTLE-LASLLLDSTRRCFRKRASV 90
Query: 289 Y 289
+
Sbjct: 91 H 91
>At3g18660.1 68416.m02370 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-1 from
Homo sapiens [SP|P46976], Oryctolagus cuniculus
[SP|P13280]
Length = 655
Score = 29.1 bits (62), Expect = 5.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 128 ILQDENLQSNYIQNLVNEEFHLCQIASDKSP----NNYHSWNH---RMWLLNTLKKITNF 180
IL D+N+ + L + + I ++P + Y+ WN+ R+W L KI
Sbjct: 352 ILVDDNISGYHRSGLEAAGWQIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFI 411
Query: 181 SLDLLYIKEYNF 192
DLL ++ +F
Sbjct: 412 DADLLILRNIDF 423
>At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing
protein
Length = 354
Score = 28.7 bits (61), Expect = 7.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 22 NCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
NC +S K Y YS ++FCKT RR T G
Sbjct: 77 NCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRG 113
>At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing
protein
Length = 323
Score = 28.7 bits (61), Expect = 7.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 22 NCLGLESWCVKHVYMYCYSELMDKYFCKTKRRNSTLG 58
NC +S K Y YS ++FCKT RR T G
Sbjct: 77 NCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRG 113
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,319,962
Number of Sequences: 28952
Number of extensions: 435680
Number of successful extensions: 1324
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 24
length of query: 418
length of database: 12,070,560
effective HSP length: 83
effective length of query: 335
effective length of database: 9,667,544
effective search space: 3238627240
effective search space used: 3238627240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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