Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001560-TA|BGIBMGA001560-PA|IPR000980|SH2 motif,
IPR001452|Src homology-3, IPR001849|Pleckstrin-like, IPR001936|Ras
GTPase-activating protein, IPR000008|C2 calcium-dependent membrane
targeting, IPR008936|Rho GTPase activation protein, IPR008973|C2
calcium/lipid-binding region, CaLB
         (932 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   2.4  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    25   3.2  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    25   3.2  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    24   4.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   7.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   7.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   7.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   7.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   9.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 603  QELVMPREEYNPLRQLLLEPGIPAVKALADL---CRTDRQPLATSVLNTFAECGRGAE 657
            +E++  + E+  +R++ L  G+     L D    C   R PL T++ N  A+ G G +
Sbjct: 1717 REMIKRKSEF--IRKMDLGGGMIWALDLDDFKNRCGEGRHPLLTTIRNVLADAGTGQQ 1772


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 114 FRITAVCGDYYIGGRQFDS 132
           F + A  GD ++GG  FD+
Sbjct: 45  FEVKATAGDTHLGGEDFDN 63


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 114 FRITAVCGDYYIGGRQFDS 132
           F + A  GD ++GG  FD+
Sbjct: 45  FEVKATAGDTHLGGEDFDN 63


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 114 FRITAVCGDYYIGGRQFD 131
           F + A  GD ++GG  FD
Sbjct: 44  FEVVATSGDTHLGGEDFD 61


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 352 RDQIGLKKTKGIKHYGYLNKKSDKG 376
           R++I  K  + +KH+  L +K+ KG
Sbjct: 371 REEIHEKARENLKHHANLRQKNQKG 395


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 704  SETIQKLIDSKQTAELNPTKMDSPDDACNNAEFL 737
            SET+  +  +K+   +NP  ++ PD      EFL
Sbjct: 1195 SETVSTVPQNKRDDLVNPYWIEDPDVRKGEVEFL 1228


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 704  SETIQKLIDSKQTAELNPTKMDSPDDACNNAEFL 737
            SET+  +  +K+   +NP  ++ PD      EFL
Sbjct: 1195 SETVSTVPQNKRDDLVNPYWIEDPDVRKGEVEFL 1228


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 704  SETIQKLIDSKQTAELNPTKMDSPDDACNNAEFL 737
            SET+  +  +K+   +NP  ++ PD      EFL
Sbjct: 1195 SETVSTVPQNKRDDLVNPYWIEDPDVRKGEVEFL 1228


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 704  SETIQKLIDSKQTAELNPTKMDSPDDACNNAEFL 737
            SET+  +  +K+   +NP  ++ PD      EFL
Sbjct: 1195 SETVSTVPQNKRDDLVNPYWIEDPDVRKGEVEFL 1228


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 431 CFQLVERALPCL 442
           CF LVE  LPC+
Sbjct: 225 CFSLVEDTLPCV 236


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,862
Number of Sequences: 317
Number of extensions: 9349
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 14
length of query: 932
length of database: 114,650
effective HSP length: 63
effective length of query: 869
effective length of database: 94,679
effective search space: 82276051
effective search space used: 82276051
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)