Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001560-TA|BGIBMGA001560-PA|IPR000980|SH2 motif,
IPR001452|Src homology-3, IPR001849|Pleckstrin-like, IPR001936|Ras
GTPase-activating protein, IPR000008|C2 calcium-dependent membrane
targeting, IPR008936|Rho GTPase activation protein, IPR008973|C2
calcium/lipid-binding region, CaLB
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    54   9e-08
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    34   0.080
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      34   0.080
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    30   1.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   4.0  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    28   6.9  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    28   6.9  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   9.1  

>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 31/134 (23%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 737 LLMILDQITLSIFTSPEACPKPVRYLCGCLQRAAVAKWPN-ERFVRTRVVSGFIFLRLIC 795
           LL++  +   ++  S +  P  +R++C  ++      +P+        ++ GF FLR + 
Sbjct: 284 LLLLTKRFLDAVLNSIDEIPYGIRWVCKLIRNLTNRLFPSISDSTICSLIGGFFFLRFVN 343

Query: 796 PALVEPRAWTLVQRAPPPHAQRSLLMVAKCLQNLANLVEFGAKEPYMEV-VNPFILKNKE 854
           PA++ P+   L+   P  + +++L  +AK +Q++AN     + + +++V   P + + +E
Sbjct: 344 PAIISPQTSMLLDSCPSDNVRKTLATIAKIIQSVAN--GTSSTKTHLDVSFQPMLKEYEE 401

Query: 855 RMVVFLDQLSNVPD 868
           ++   L +L NV D
Sbjct: 402 KVHNLLRKLGNVGD 415


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 167 RVVAILPYTKMPDTD-ELTFQKGDIFFVHNDMGDGWLWVTAHRTGEQGM 214
           R V  + Y+  P+T+ EL  +KGD+  V  ++ +GW WV   + GE G+
Sbjct: 423 RKVVRMKYSFEPETENELKLKKGDLLLVLKEIDEGW-WV-GEKLGEDGV 469


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 784  VVSGFIFLRLICPALVEPRAWTLVQRAPPPHAQRSLLMVAKCLQNLANLVEFGAKE-PYM 842
            V+  F++   + P LV P  + LV  +     +++L  ++  L  + ++    +K+  + 
Sbjct: 1030 VIGKFVYWAYVAPVLVSPDNFKLVDGSITALQRKNLYTLSSILSEIFSIESCDSKQLGFF 1089

Query: 843  EVVNPFILKNKERMVVFLDQLSNVPDP 869
              ++ FI  +K+  ++ L++L +V DP
Sbjct: 1090 RPLSEFIEVSKQDTMLMLERLVDVVDP 1116


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 366 YGYLNKKSDKGAKKWKPLYCVLLQEGTDTHLYFYDSPKRTKPKGLIDLS 414
           +G++ K+SD+    WK  Y VL      T L +Y S      KGLID++
Sbjct: 702 HGWMRKRSDRYGV-WKSRYFVL----KGTRLSYYHSLNDASEKGLIDMT 745


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 168 VVAILPY-TKMPDTDELTFQKGDIFFVHNDMGDGW 201
           V+A+  Y  ++P+  E++FQKGD   V     DGW
Sbjct: 871 VIALYDYQAQIPE--EISFQKGDTLMVLRTQEDGW 903


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 84  SKQGSYLVRESDRKPGSYVLSYLG-RTGINHFRITAVCGDYYIGGRQFDS 132
           S QG   V   D   G++ +S L    GI  F + A  GD ++GG  FDS
Sbjct: 186 SNQGESNVLIFDLGGGTFDVSLLTIEEGI--FEVKATAGDTHLGGEDFDS 233


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 397 YFYDSPKRTKPKGLIDLSCAYLYQVHESLWEKEFCF 432
           Y + +P  T+P G +     + Y++ +S W ++F +
Sbjct: 11  YLHFAPTNTEPPGTLIWFLGHSYKIEDSQWPEKFLY 46


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 100 SYVLSYLGRTGINHFRITAVCGDYYIGGRQFDSLTELVGFYS 141
           +Y++ YL +T +++  +  +  D +I G  + S+T L  FY+
Sbjct: 84  TYMIQYLDKTALSYAALYGMKTDTHIDGHTYSSMTTL--FYA 123


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,208,192
Number of Sequences: 5004
Number of extensions: 175405
Number of successful extensions: 378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 9
length of query: 932
length of database: 2,362,478
effective HSP length: 79
effective length of query: 853
effective length of database: 1,967,162
effective search space: 1677989186
effective search space used: 1677989186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)