GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001560-TA|BGIBMGA001560-PA|IPR000980|SH2 motif,
IPR001452|Src homology-3, IPR001849|Pleckstrin-like, IPR001936|Ras
GTPase-activating protein, IPR000008|C2 calcium-dependent membrane
targeting, IPR008936|Rho GTPase activation protein, IPR008973|C2
calcium/lipid-binding region, CaLB
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929...    40   0.007
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757     31   3.2  
05_04_0397 - 20937280-20937386,20937494-20939681                       31   3.2  
01_07_0304 - 42628086-42628104,42628828-42630263                       31   4.3  
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105...    31   5.6  
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572...    31   5.6  
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814...    30   7.5  

>09_06_0140 +
           21090686-21091645,21092142-21092221,21092705-21092906,
           21093052-21093327,21093414-21093482,21093638-21093785,
           21094080-21094228,21094897-21095061,21095623-21095732,
           21095868-21095946,21095947-21096240
          Length = 843

 Score = 40.3 bits (90), Expect = 0.007
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 505 PHLRVLLGAAPVARTRPRPSP-DPHWXXXXXXXXMPPDVTSLTITVHNTGKRGKESEVAE 563
           P++ + +  A VARTR  P+  DP W        +     +L   V +    G +  +  
Sbjct: 80  PYVTLSVAGAVVARTRVIPNDQDPVWDERFAVP-LAHYAAALEFHVKDNDTFGAQL-IGT 137

Query: 564 LTIELANLANGEEIEEWYPLVGMT--PIGEWGSLRLRIRY 601
           +TI    +A+ +E+E+W+P++G    P     +LRLR+R+
Sbjct: 138 VTIPADRVASCQEVEDWFPIIGNNGRPYKPDTALRLRLRF 177


>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
          Length = 817

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 16/112 (14%)

Query: 500 RLAPRPHLRVLLGAAPVARTRP---RPSPDPHWXXXXXXXXMPPDVTSLTITVHNTGKRG 556
           RLA R ++ V +GAA VARTR     P+ +P W          P    +  TV +    G
Sbjct: 48  RLAHRIYVDVDVGAARVARTREVEFHPT-NPVWNQSFRLHCAYP-AAPVAFTVKSQHLVG 105

Query: 557 KESEVAELTIELANLANGEEIEEWYPLVGMTPIGEWG------SLRLRIRYM 602
               +    +  A +A GE +E W  L G    GE G       LR+R+R++
Sbjct: 106 -AGVLGAARVPAARVATGEPVEGWLDLRG----GEHGHATHTPKLRVRLRFL 152


>05_04_0397 - 20937280-20937386,20937494-20939681
          Length = 764

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 526 DPHWXXXXXXXXMPPDVTSLTITVHNT---GKRG--KESEVAELTIELANLANGEEIEEW 580
           +P W          P  T +T+ V +    GK G  ++  + ++ I L+ L        +
Sbjct: 443 NPQWNEQYTWEVFDP-CTVITVVVFDNNQIGKNGDARDESIGKVRIRLSTLETDRVYTHF 501

Query: 581 YPLVGMTPIG--EWGSLRLRIRY 601
           YPL+ + P G  + G L L +R+
Sbjct: 502 YPLLALKPSGLKKTGELHLAVRF 524


>01_07_0304 - 42628086-42628104,42628828-42630263
          Length = 484

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 174 YTKMPDTDELTF-QKGDIFFVHNDMGDGWLWVTAHRTGEQGMIFRELVEDLDPSIDPNTV 232
           +T +P+T   T  Q G++F +HN  GD     T   + E+       VE   PS   +T 
Sbjct: 413 FTYLPETRGRTLEQMGELFRIHNMAGDDDSAATRPPSPEEEEKITNYVEMAAPSSSSSTA 472

Query: 233 FSWFHPN 239
            S  H N
Sbjct: 473 TSSHHAN 479


>07_03_0587 +
           19708841-19709282,19709693-19709883,19710429-19710568,
           19710955-19711380,19711540-19712685,19712805-19712934,
           19713257-19713492,19713575-19713710,19713793-19713869,
           19714692-19714798,19714896-19714996
          Length = 1043

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 336 TTGAAAEKIYATLRECRDQIGLKKTKGIKHY--GYLNKKSDK--GAKKWKPLYCVLLQEG 391
           ++G  +EK+     +CRD++ +    GI ++   +L K + K   A +W P     LQ  
Sbjct: 867 SSGNRSEKLRMGKLDCRDEVVVDLFAGIGYFVLPFLVKANAKLVYACEWNPHALEALQRN 926

Query: 392 T-DTHL----YFYDSPKR-TKPKGLIDLSCAYLYQVHESLWE 427
             D H+       +   R T PKG+ D  C  L    E  W+
Sbjct: 927 VMDNHVADRCIILEGDNRLTAPKGIADRVCLGLLPSSECSWD 968


>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
            24157361-24157445,24157525-24157666,24157762-24157894,
            24157993-24158254,24158331-24158519,24158596-24158721,
            24158809-24159195,24159288-24159398,24159629-24160423,
            24161114-24161255,24161350-24162518,24162609-24162818,
            24163010-24163478,24164037-24164464
          Length = 1637

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 94   SDRKPGSYVLSYLGRTGINHFRITAVCGDYYIGGRQFDSLTELVGFY 140
            S   PG+++LSY+  T  +H  I      +    R FD++  LV ++
Sbjct: 1391 SHEHPGTFILSYIRSTNPHHEYIGLYPKGFRFRKRDFDNIDRLVSYF 1437


>01_06_0366 - 28779899-28780543,28780813-28781076,28781165-28781431,
            28781546-28781774,28781868-28781985,28782229-28782486,
            28782585-28782858,28782950-28783475,28784289-28784527,
            28784626-28784847,28784912-28784914,28785124-28785299,
            28786147-28786201,28786288-28786557
          Length = 1181

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 556  GKESEVAELTIE-LANLANGEEIEEWYPLVGMTPIGEWGSLRLRIRYMQELVMPREEYNP 614
            GK SEV E  I  +A  AN  E     P    T +GE G ++L     Q + + R     
Sbjct: 1037 GKHSEVTEEEITAVAKAANAHEFVSSLPQGYDTVVGEKG-VQLSGGQKQRVAIARAILKD 1095

Query: 615  LRQLLLEPGIPAVKALADLCRTDRQPLATSVLNTFAECGR-----GAELARELTCAEVAR 669
             + LLL+    A+ A ++    D          T     R     GA++   L   ++A 
Sbjct: 1096 PKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKGADMIAVLKEGKIAE 1155

Query: 670  EGDHKTLFR 678
            +G H+ L R
Sbjct: 1156 KGKHEALLR 1164


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,147,928
Number of Sequences: 37544
Number of extensions: 1208478
Number of successful extensions: 2652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2646
Number of HSP's gapped (non-prelim): 10
length of query: 932
length of database: 14,793,348
effective HSP length: 89
effective length of query: 843
effective length of database: 11,451,932
effective search space: 9653978676
effective search space used: 9653978676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)