GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001560-TA|BGIBMGA001560-PA|IPR000980|SH2 motif,
IPR001452|Src homology-3, IPR001849|Pleckstrin-like, IPR001936|Ras
GTPase-activating protein, IPR000008|C2 calcium-dependent membrane
targeting, IPR008936|Rho GTPase activation protein, IPR008973|C2
calcium/lipid-binding region, CaLB
         (932 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.93 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   1.2  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    24   6.6  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    24   6.6  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    24   6.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 690 FMRAHCKPFLQAAISETIQKLIDSKQTAELNPTKMDSPDDACNNAEFLLMILDQITLSIF 749
           ++     P  +  +   I+K ID  +    +    D  +    + +++ M+LD+I L IF
Sbjct: 495 YVHEDVSPTFEKPLVREIEKTIDDARFIAQHAKNKDKFESVEEDWKYVAMVLDRIFLWIF 554

Query: 750 T 750
           T
Sbjct: 555 T 555


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 576 EIEEWYPLVGMTPIGEW 592
           E+EEW PL    PI  W
Sbjct: 526 EVEEWNPLTDTVPIHTW 542


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 169 VAILPYTKMPDTDELTFQKGDIFFVHNDMGDGWLWVTAHR 208
           V +LP  +       TF    + F  +D G  W W T  R
Sbjct: 38  VLVLPSIERDQMMAATFDFPSLSFEDSDEGSNWNWNTLLR 77


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 169 VAILPYTKMPDTDELTFQKGDIFFVHNDMGDGWLWVTAHR 208
           V +LP  +       TF    + F  +D G  W W T  R
Sbjct: 38  VLVLPSIERDQMMAATFDFPSLSFEDSDEGSNWNWNTLLR 77


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 169 VAILPYTKMPDTDELTFQKGDIFFVHNDMGDGWLWVTAHR 208
           V +LP  +       TF    + F  +D G  W W T  R
Sbjct: 38  VLVLPSIERDQMMAATFDFPSLSFEDSDEGSNWNWNTLLR 77


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,483
Number of Sequences: 429
Number of extensions: 12056
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 6
length of query: 932
length of database: 140,377
effective HSP length: 64
effective length of query: 868
effective length of database: 112,921
effective search space: 98015428
effective search space used: 98015428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)