GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001560-TA|BGIBMGA001560-PA|IPR000980|SH2 motif,
IPR001452|Src homology-3, IPR001849|Pleckstrin-like, IPR001936|Ras
GTPase-activating protein, IPR000008|C2 calcium-dependent membrane
targeting, IPR008936|Rho GTPase activation protein, IPR008973|C2
calcium/lipid-binding region, CaLB
         (932 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15010.1 68414.m01793 expressed protein                             33   0.67 
At4g35790.3 68417.m05086 phospholipase D delta / PLD delta (PLDD...    33   1.2  
At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDD...    33   1.2  
At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDD...    33   1.2  
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ...    31   3.6  
At4g11610.1 68417.m01859 C2 domain-containing protein contains I...    31   4.7  
At1g22610.1 68414.m02823 C2 domain-containing protein contains I...    31   4.7  
At1g65440.1 68414.m07424 glycine-rich protein                          30   6.2  

>At1g15010.1 68414.m01793 expressed protein
          Length = 142

 Score = 33.5 bits (73), Expect = 0.67
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 109 TGINHFRITAVCGDYYIGGRQFD 131
           TG N  R T VC DYY GGR  D
Sbjct: 24  TGTNRRRTTTVCADYYRGGRTVD 46


>At4g35790.3 68417.m05086 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 693

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 505 PHLRVLLGAAPVARTRP-RPSPDPHWXXXXXXXXMPPDVTSLTITVHNTGKRGKESEVAE 563
           P++ V++  A +ARTR  + S +P W          P    L   V +    G +  +  
Sbjct: 79  PYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQI-IGT 136

Query: 564 LTIELANLANGEEIEEWYPLVG 585
             I + ++A+GE I  W+P++G
Sbjct: 137 AKIPVRDIASGERISGWFPVLG 158


>At4g35790.2 68417.m05085 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 857

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 505 PHLRVLLGAAPVARTRP-RPSPDPHWXXXXXXXXMPPDVTSLTITVHNTGKRGKESEVAE 563
           P++ V++  A +ARTR  + S +P W          P    L   V +    G +  +  
Sbjct: 79  PYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQI-IGT 136

Query: 564 LTIELANLANGEEIEEWYPLVG 585
             I + ++A+GE I  W+P++G
Sbjct: 137 AKIPVRDIASGERISGWFPVLG 158


>At4g35790.1 68417.m05084 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 868

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 505 PHLRVLLGAAPVARTRP-RPSPDPHWXXXXXXXXMPPDVTSLTITVHNTGKRGKESEVAE 563
           P++ V++  A +ARTR  + S +P W          P    L   V +    G +  +  
Sbjct: 79  PYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQI-IGT 136

Query: 564 LTIELANLANGEEIEEWYPLVG 585
             I + ++A+GE I  W+P++G
Sbjct: 137 AKIPVRDIASGERISGWFPVLG 158


>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
           similar to ubiquitin conjugating enzyme 6 from [Homo
           sapiens] GI:14029267, [Mus musculus] GI:14029263;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 243

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 236 FHPNCTKSEAVDMLVKAGPGSFLVRPSDNSPGDYSLFFHINNQI-QRFRIEKKGVRYLMG 294
           FHP           +  G  SF++   DNSP   S    +N  + ++ R+ K  + +   
Sbjct: 93  FHPESWNPMWSVSSILTGLLSFMM---DNSPTTGS----VNTSVAEKQRLAKSSLAFNCK 145

Query: 295 GRTFECL-DAVINRYRKEQIVEGHTLGQPLIAEGHTIEPQQSTTGAAAEKIYATLRECRD 353
             TF  L    + +Y ++Q+ E     Q      +   PQ+      +EK     +E   
Sbjct: 146 SVTFRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVGLKKESIQ 205

Query: 354 QIGLKKTK 361
           ++GLK+ +
Sbjct: 206 EVGLKERR 213


>At4g11610.1 68417.m01859 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1011

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 543 TSLTITVHNTGKRGKES----EVAELTIELANLANGEEIEEWYPLVGMTPIG--EWGSLR 596
           T LT+ V + G+ G++     ++ ++ I L+ L  G      YPL+ + P G  + G L 
Sbjct: 667 TVLTVGVFDNGQLGEKGNRDVKIGKIRIRLSTLETGRIYTHSYPLLVLHPTGVKKMGELH 726

Query: 597 LRIRY 601
           + +R+
Sbjct: 727 MAVRF 731


>At1g22610.1 68414.m02823 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1029

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 551 NTGKRGKESEVAELTIELANLANGEEIEEWYPLVGMTPIG--EWGSLRLRIRY 601
           N G   K+  + ++ + L+ L        +YPL+ +TP G  + G L+L +RY
Sbjct: 697 NDGGDFKDQRIGKVRVRLSTLETDRVYTHFYPLLVLTPGGLKKNGELQLALRY 749


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 94   SDRKPGSYVLSYLGRTGINHFRITAVCGDYYIGGRQFDSLTELVGFYS-HCSDLLK 148
            S   PG+++LSY+  T  +H  I      +    R F+ +  LV ++  H  D L+
Sbjct: 1360 SHEHPGTFILSYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPLQ 1415


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,259,807
Number of Sequences: 28952
Number of extensions: 945664
Number of successful extensions: 1853
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1846
Number of HSP's gapped (non-prelim): 14
length of query: 932
length of database: 12,070,560
effective HSP length: 88
effective length of query: 844
effective length of database: 9,522,784
effective search space: 8037229696
effective search space used: 8037229696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)