GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001559-TA|BGIBMGA001559-PA|IPR004148|BAR, IPR001452|Src
homology-3, IPR013315|Spectrin alpha chain
         (843 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   8.6  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   8.6  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 728 SGPHTGLRPAPAFKPHPAPRAQPNGKDP 755
           SG     +PA   KP PAP A  N  +P
Sbjct: 244 SGSSRSHQPATKSKPRPAP-ASRNAPEP 270


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 555 KKLQGRRLDFDCKRRRQAKGSHIPDDEIRQAEEKF 589
           KK++G+   F  K + +  G  + D++  + +E+F
Sbjct: 155 KKIRGKISSFFSKLKHKIVGESVIDEKAEEHKEQF 189


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,118
Number of Sequences: 317
Number of extensions: 5092
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 2
length of query: 843
length of database: 114,650
effective HSP length: 63
effective length of query: 780
effective length of database: 94,679
effective search space: 73849620
effective search space used: 73849620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)