GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001559-TA|BGIBMGA001559-PA|IPR004148|BAR, IPR001452|Src
homology-3, IPR013315|Spectrin alpha chain
         (843 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY496421-1|AAS80138.1|  439|Anopheles gambiae bacteria responsiv...    29   0.51 
AF043436-1|AAC05661.1|  263|Anopheles gambiae putative pupal-spe...    29   0.67 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   3.6  

>AY496421-1|AAS80138.1|  439|Anopheles gambiae bacteria responsive
           protein 2 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 732 TGLRPAPAFKP-HPAPRAQPNGKDPWTAVSVASPLPS 767
           TG+ P PA  P +P P+ Q  G   W  V    P PS
Sbjct: 312 TGVPPLPADGPSNPGPQTQTEGFYSWAEVCAMLPNPS 348


>AF043436-1|AAC05661.1|  263|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2c protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 17/57 (29%), Positives = 20/57 (35%)

Query: 711 HTGPRTGPHAGPHTGPHSGPHTGLRPAPAFKPHPAPRAQPNGKDPWTAVSVASPLPS 767
           H+ P    H+ P    HS P      APA   H AP        P    SV    P+
Sbjct: 58  HSAPAIYQHSAPAIYQHSAPAIYQHSAPAIYQHSAPAIVKTIAQPTIIKSVEHHAPA 114



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 711 HTGPRTGPHAGPHTGPHSGPHTGLRPAPAFKPHPAPRAQPNGKDPWTAVSVASP 764
           H  P    H+ P    HS P      APA   H AP    +   P    ++A P
Sbjct: 50  HAAPAIYQHSAPAIYQHSAPAIYQHSAPAIYQHSAPAIYQHSA-PAIVKTIAQP 102


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 698 LSTPDPFRAWEAPHTGPRTGPHAGPHTGPHSGPHTGLRPAPAF-KPHPAPRAQPNGKDPW 756
           L++P+P RA     T P  GP  G      S P      A ++ KP+        G+ P 
Sbjct: 372 LNSPNPARAPPRNFTMPGPGPGIGER--EKSNPSRPPSVAGSYGKPNDHELDSSGGRPPL 429

Query: 757 TAVS--VASPLPSPVKSPARTP 776
            A+   +    P P +SP ++P
Sbjct: 430 HALKDFINKEPPRPGQSPTQSP 451



 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 718 PHAGPHTGPHSGPHTGLRPAPAFKPHPAPRAQPNGKDPWTAVSVASPLPSPVKSPARTPM 777
           P  G  T P      G+ P P   P P     P G  P     +  P P   +   R PM
Sbjct: 201 PRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGM-QPRPPSAQGMQRPPM 259

Query: 778 APNKAP 783
                P
Sbjct: 260 MGQPPP 265


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,913
Number of Sequences: 2123
Number of extensions: 21452
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 7
length of query: 843
length of database: 516,269
effective HSP length: 70
effective length of query: 773
effective length of database: 367,659
effective search space: 284200407
effective search space used: 284200407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)