GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001559-TA|BGIBMGA001559-PA|IPR004148|BAR, IPR001452|Src
homology-3, IPR013315|Spectrin alpha chain
         (843 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   2.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   2.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 454 LQPNPTARAKMAAVKGISKLSGQAKSNTYPQPEGV 488
           L+  P  +  + A+KG  K+SG  K   Y   EG+
Sbjct: 19  LEDAPRVKTPLGAIKGYYKISGNGKQ--YEAYEGI 51


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 454 LQPNPTARAKMAAVKGISKLSGQAKSNTYPQPEGV 488
           L+  P  +  + A+KG  K+SG  K   Y   EG+
Sbjct: 19  LEDAPRVKTPLGAIKGYYKISGNGKQ--YEAYEGI 51


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,047
Number of Sequences: 429
Number of extensions: 6732
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 843
length of database: 140,377
effective HSP length: 64
effective length of query: 779
effective length of database: 112,921
effective search space: 87965459
effective search space used: 87965459
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)