GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001558-TA|BGIBMGA001558-PA|IPR002301|Isoleucyl-tRNA
synthetase, class Ia, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR013155|tRNA synthetase, valyl/leucyl, anticodon-binding,
IPR001412|Aminoacyl-tRNA synthetase, class I, IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding
         (1212 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles ...    29   0.74 
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    29   0.74 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   3.9  
AY496420-1|AAS80137.1|  447|Anopheles gambiae bacteria responsiv...    26   5.2  

>U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles
            gambiae putativeribosomal protein S13 mRNA, complete cds.
            ).
          Length = 151

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 982  NRVQKLRKKAHLVPTDEVDVYFSVAKTSDILRIINLHREFIESTVRAPLI 1031
            N+V ++ K   L P    D+YF + K   I + +  +R+ I+S  R  LI
Sbjct: 69   NKVLRIMKAVGLKPDIPEDLYFLIKKAVSIRKHLERNRKDIDSKFRLILI 118


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 814 RAVQRMQSVIELGRVLRDRKTIPIKYPLPEMIVIHRDTTYLDDVKSLEKYVLEEMNVKKL 873
           R  QR ++  +  RV+R  + IP +  L E      + T  +++KSLE++   E+  +K+
Sbjct: 147 RLKQRFEAERKRTRVIRTEEYIPTQEELLE----EAEITERENIKSLERFRRMELEKQKI 202

Query: 874 ELTSDKEKHGITLR 887
             T +K+  G T+R
Sbjct: 203 RPT-NKKFTGPTIR 215


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 913 LDNNQCEKIITNGFVELVGQKIDVSEIRLIFQATGSDQYEAHSDNDVLILLNVTPDQDML 972
           L+ N    +I  G +  V        + +I +A G+  YEA  D+ + ++       + L
Sbjct: 136 LNVNNPNFLIMQGRITKVLNMKPAEILSMIEEAAGTSMYEAKRDSALKLIEKKDAKLNEL 195

Query: 973 DEGFSREIINRVQKLRK-KAHLVPTDEV 999
                 EI  +++KLRK + H +   +V
Sbjct: 196 YAVIREEIEPKLEKLRKEREHYIEFQKV 223


>AY496420-1|AAS80137.1|  447|Anopheles gambiae bacteria responsive
            protein 1 protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 1174 TLFLENPLGKETLDRANAVKFVTQYLEINP 1203
            T+FL+ PL K+ +D  N   +  Q  E NP
Sbjct: 233  TIFLDIPLLKDNIDYVNVAAYDQQTPERNP 262


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,198
Number of Sequences: 2123
Number of extensions: 53994
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 5
length of query: 1212
length of database: 516,269
effective HSP length: 72
effective length of query: 1140
effective length of database: 363,413
effective search space: 414290820
effective search space used: 414290820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)