GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001558-TA|BGIBMGA001558-PA|IPR002301|Isoleucyl-tRNA
synthetase, class Ia, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR013155|tRNA synthetase, valyl/leucyl, anticodon-binding,
IPR001412|Aminoacyl-tRNA synthetase, class I, IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding
         (1212 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   4.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   6.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 1084 FGVTSNQASIILKDNENKFISLNKLYDEVN 1113
            FG  SN+ +++ KD     +S+NK +++ N
Sbjct: 671  FGSWSNRPNLLFKDEAKDLVSVNKSWNKWN 700


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 1084 FGVTSNQASIILKDNENKFISLNKLYDEVN 1113
            FG  SN+ +++ KD     +S+NK +++ N
Sbjct: 671  FGSWSNRPNLLFKDEAKDLVSVNKSWNKWN 700


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 1084 FGVTSNQASIILKDNENKFISLNKLYDEVN 1113
            FG  SN+ +++ KD     +S+NK +++ N
Sbjct: 671  FGSWSNRPNLLFKDEAKDLVSVNKSWNKWN 700


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 674 EDHVDYRFNEKAIRENVMDKWITSFTQSLIQFVKKEMAAYRLY 716
           ED V+ +   +++ E   +  + SFTQ LI+    +   Y LY
Sbjct: 195 EDDVEIKVQVESVIE--FEPGLDSFTQQLIEMKNAQARVYLLY 235


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 666 QNVERLVQEDHVDYRFNEKAIRENVMDKWI-TSFTQSL 702
           QN     + + + Y F    +  NV+DKWI T   +SL
Sbjct: 253 QNEVGFYEVEGIGYDFIPTVLDRNVIDKWIKTEDNESL 290


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,715
Number of Sequences: 429
Number of extensions: 16053
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 5
length of query: 1212
length of database: 140,377
effective HSP length: 66
effective length of query: 1146
effective length of database: 112,063
effective search space: 128424198
effective search space used: 128424198
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)