Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001557-TA|BGIBMGA001557-PA|IPR005821|Ion transport,
IPR010526|Sodium ion transport-associated, IPR001696|Na+ channel,
IPR002048|Calcium-binding EF-hand
(1969 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020... 38 0.082
07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542... 35 0.76
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707... 34 1.0
10_08_0237 - 16085539-16086120 33 3.1
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523... 33 3.1
07_03_1024 - 23360347-23360426,23362575-23362733,23362826-233629... 33 3.1
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112... 32 5.4
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489... 32 5.4
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 31 7.1
>01_06_0253 -
27901204-27901251,27901673-27901744,27901944-27902030,
27902484-27902574,27903706-27903769,27904354-27904461,
27905124-27905181,27905813-27905956,27906307-27906372,
27907227-27907299,27908439-27908500,27908923-27909000,
27909124-27909229,27909317-27909483,27909961-27910048,
27911204-27911313,27911833-27911928,27912354-27912461,
27912568-27912711,27913850-27914065
Length = 661
Score = 37.9 bits (84), Expect = 0.082
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 353 GYTSFDTFGWAFLSAFRLMTQ----DYWENLYQ------LFFVVIIFLGSFYLVNLILAI 402
G T F ++G F L T D W Y+ LFF+V + LG ++L NLILA+
Sbjct: 278 GKTVFSSYGTTLYQMFILFTTSNNPDVWVPAYKSSRWSSLFFIVYVLLGVYFLTNLILAV 337
Query: 403 VAMSY 407
+ S+
Sbjct: 338 IYDSF 342
Score = 37.5 bits (83), Expect = 0.11
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1209 LKTFKLIENTYFETAVITMILLSSLALALEDVHLPHRPILQDILYYMDRIFTVIFFIEML 1268
LK+F + + FE VI ++L++ +A+ +E Q + ++ +F I+ IEM
Sbjct: 457 LKSF--VRSPLFEYIVIFVLLMNLVAVIIETTLDIENSSSQKVWQEVEFVFGWIYVIEMA 514
Query: 1269 IKWLALGFQKYFTNAWCWLDFIIVMVSLI 1297
+K +LGF Y+ DF++ I
Sbjct: 515 LKIFSLGFGAYWMEGQNKFDFVLTWTIFI 543
Score = 36.7 bits (81), Expect = 0.19
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 141 PLFSLFIITTILVNCILMIMPTTPTVEST---------EVIFTGIYTFESAVKVMARGFI 191
PLF +I +L+N + +I+ TT +E++ E +F IY E A+K+ + GF
Sbjct: 464 PLFEYIVIFVLLMNLVAVIIETTLDIENSSSQKVWQEVEFVFGWIYVIEMALKIFSLGF- 522
Query: 192 LQPFTYLRDAWNWLDFVV 209
Y + N DFV+
Sbjct: 523 ---GAYWMEGQNKFDFVL 537
>07_03_0204 - 15150854-15151147,15152230-15153689,15154055-15154266,
15155123-15155275,15155569-15155630,15155733-15155785,
15156380-15156452,15156499-15156619,15156699-15156878,
15157333-15157391
Length = 888
Score = 34.7 bits (76), Expect = 0.76
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 1062 KYKKGKILMNNINAITDNHRDNRLDCELNHHGYPIQDDDTISQKSYGSHKIR-SFKDESH 1120
K K +++ N+N + H + + + + DDT +K +G HK S K E
Sbjct: 401 KKKPSVVVIKNVNVTSKKHGSSESESQSSSEDGSQDSDDTHYKKRHGKHKSSGSKKKEGA 460
Query: 1121 KGSADTIDGEEKKDAS 1136
K + D+ D KD S
Sbjct: 461 KTNFDSGDDYNNKDES 476
>09_06_0194 -
21469815-21470117,21470226-21470376,21470463-21470700,
21470784-21470991,21471107-21471309,21471407-21471508,
21471622-21472945
Length = 842
Score = 34.3 bits (75), Expect = 1.0
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 298 SWGNLTDENW---ERFCQNETNWYGEGGDYPLCGNSSGAGQCEPGYV----CLQGFGP 348
SW N++ W RF + + + +G G + CGNS+G G G V CL+GF P
Sbjct: 275 SWSNVSSA-WVTNARFPRRDCSLFGYCGAFGYCGNSTGGGGGAGGGVSTCHCLEGFEP 331
>10_08_0237 - 16085539-16086120
Length = 193
Score = 32.7 bits (71), Expect = 3.1
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 312 QNETNWYGEGGDYPLCGNS---SGAGQCEPGYVCL-QGFGPNPNYGYTSFDTFGW 362
Q +N+YG GG+Y G S G GQ Y QG G GY+ ++ W
Sbjct: 99 QYSSNYYGSGGEYSSAGGSGGGGGGGQGNGNYGSTGQGSGSGTGSGYSDANSNYW 153
>10_02_0094 -
5228472-5228703,5229040-5229133,5230627-5230675,
5231229-5231321,5231404-5231635,5232416-5232506,
5232693-5232784,5232862-5232970,5233331-5233430,
5233614-5233754,5233846-5234010,5234088-5234279,
5234409-5234537,5234619-5234734,5234821-5234965,
5235039-5235102,5235241-5235463,5235584-5236244,
5236909-5237250
Length = 1089
Score = 32.7 bits (71), Expect = 3.1
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 227 LRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFS-LSVFALMGLQIYMGVL 285
L++F VL +K + + P + T + +N + L +F L + ++ +G L
Sbjct: 766 LKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCL 825
Query: 286 TQKCVKVFPEDGSWGNL 302
T C+++F D S GN+
Sbjct: 826 TGLCLQMFDNDLSLGNI 842
>07_03_1024 -
23360347-23360426,23362575-23362733,23362826-23362937,
23362963-23363307
Length = 231
Score = 32.7 bits (71), Expect = 3.1
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 23/132 (17%)
Query: 163 TPTV--ESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGID 220
TP V +S EV+ G+ A V+ F L+D + DF+ I +
Sbjct: 106 TPRVLLQSAEVVLRGLTALGVATMVLT-------FLILKDIEGYFDFLSIRYPFALPSFF 158
Query: 221 LGNLAALRTFRVLRALKT---------VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLS 271
L + F V + VAI+ GL +G ++E DV+ +TMFSL
Sbjct: 159 LRYERVMHDFVVAGGITVLTPFIWGALVAIMVGLGADMGPLLEL-----DVLDITMFSLE 213
Query: 272 VFALMGLQIYMG 283
+ L+G IY+G
Sbjct: 214 IKELVGHIIYVG 225
>09_03_0130 - 12609417-12610462,12610786-12611040,12611139-12611253,
12611376-12611428,12611854-12612114,12612252-12612302,
12612412-12612660,12612779-12613007,12613292-12613666
Length = 877
Score = 31.9 bits (69), Expect = 5.4
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 1329 RMQGMRVVVNALVQAIPSIFNVLLVCL 1355
R+ G+ +V N LVQ IPSIF LLV L
Sbjct: 634 RVPGIGLVYNELVQGIPSIFGHLLVTL 660
>06_03_0947 + 26248378-26248494,26248600-26248764,26248843-26248952,
26249065-26249179,26249310-26249408,26249485-26249694,
26249802-26250965
Length = 659
Score = 31.9 bits (69), Expect = 5.4
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 1005 KNKLTNQIAIHAPERVDNELELGTDLDD-------AVLYKDKKLKDQVEVAIGDGMEFTI 1057
K LT+Q A E++D+E + LD+ L D ++ + G++
Sbjct: 108 KTALTHQEAKDFREKIDDEYRINMILDNLPLVVPIRSLLDDHDAPTSYQLGVHVGIKGQY 167
Query: 1058 PGDNKYKKGKILMNNINAITDNHRDNRLDCELNHHGYPIQDDDTISQKSYGSHKIRSFKD 1117
G N+ K + N+++ + HRD D G+ + DD T S +RS K
Sbjct: 168 AGSNEEK--HFIYNHLSFLVKYHRDENTDL-ARIVGFELSDDHTNISLLCTSDDLRSTKH 224
Query: 1118 E 1118
E
Sbjct: 225 E 225
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 31.5 bits (68), Expect = 7.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1468 TLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRP 1525
+L + +G + N +E K G + TE ++K N + +M K K PR +WRP
Sbjct: 250 SLYVAVGYALTNDDEILPKEGYHCNL--TEKKEKLANRLVEMEQKPSSKNAPRSKWRP 305
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.140 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,434,863
Number of Sequences: 37544
Number of extensions: 2098974
Number of successful extensions: 5974
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5966
Number of HSP's gapped (non-prelim): 15
length of query: 1969
length of database: 14,793,348
effective HSP length: 93
effective length of query: 1876
effective length of database: 11,301,756
effective search space: 21202094256
effective search space used: 21202094256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 67 (31.1 bits)
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