GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001557-TA|BGIBMGA001557-PA|IPR005821|Ion transport,
IPR010526|Sodium ion transport-associated, IPR001696|Na+ channel,
IPR002048|Calcium-binding EF-hand
         (1969 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identic...    56   3e-07
At3g51940.1 68416.m05697 expressed protein                             32   3.4  
At2g25730.1 68415.m03084 expressed protein                             32   3.4  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    32   4.5  
At1g60160.1 68414.m06777 potassium transporter family protein si...    32   4.5  
At2g39300.1 68415.m04825 expressed protein ; expression supporte...    31   7.8  

>At4g03560.1 68417.m00488 two-pore calcium channel (TPC1) identical to
            two-pore calcium channel (TPC1) [Arabidopsis thaliana]
            gi|14041819|dbj|BAB55460
          Length = 733

 Score = 55.6 bits (128), Expect = 3e-07
 Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 33/265 (12%)

Query: 1533 VTDKKFDMIIMLFIGLNMLTMTLDHYQQSETFSAVLDY--LNMIFIVIFSSECLLKIFAL 1590
            V    F   I   + +N + + ++     E  SA   +     +F  I+  E  LKI+  
Sbjct: 427  VRSPNFGYAISFILIINFIAVVVETTLDIEESSAQKPWQVAEFVFGWIYVLEMALKIYTY 486

Query: 1591 RY-HYFVEPWNLFDFVVVMFSILSLVLSDII---EKYFVSPTLLRVVRVAKVGRVLRLVK 1646
             + +Y+ E  N FDF+V    ++    + I      +F +   +R + +A++ R++RL+ 
Sbjct: 487  GFENYWREGANRFDFLVTWVIVIGETATFITPDENTFFSNGEWIRYLLLARMLRLIRLLM 546

Query: 1647 GAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKDKGGL---------D 1697
              +  R  +      +P+L      +F V+ I+   G+  F  + + G           D
Sbjct: 547  NVQRYRAFIATFITLIPSLMPYLGTIFCVLCIYCSIGVQVFGGLVNAGNKKLFETELAED 606

Query: 1698 D--VYNFKTFVQSMILLFQMSTSAGWDGVLDGIINEEECDLPDNERGSPGNCGSATIGIT 1755
            D  ++NF  +   M+ LF +     W      +  E   DL        G   S    IT
Sbjct: 607  DYLLFNFNDYPNGMVTLFNLLVMGNWQ-----VWMESYKDL-------TGTWWS----IT 650

Query: 1756 YLLSYLVISFLIVINMYIAVILENY 1780
            Y +S+ VI+ L+++N+ +A +LE +
Sbjct: 651  YFVSFYVITILLLLNLVVAFVLEAF 675



 Score = 45.6 bits (103), Expect = 3e-04
 Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 6/163 (3%)

Query: 1215 IENTYFETAVITMILLSSLALALEDVHLPHRPILQDILYYMDRIFTVIFFIEMLIKWLAL 1274
            + +  F  A+  +++++ +A+ +E          Q      + +F  I+ +EM +K    
Sbjct: 427  VRSPNFGYAISFILIINFIAVVVETTLDIEESSAQKPWQVAEFVFGWIYVLEMALKIYTY 486

Query: 1275 GFQKYFTNAWCWLDFIIVMVSLINFVAALCGAGGIQAFKT---MRTL---RALRPLRAMS 1328
            GF+ Y+       DF++  V +I   A          F     +R L   R LR +R + 
Sbjct: 487  GFENYWREGANRFDFLVTWVIVIGETATFITPDENTFFSNGEWIRYLLLARMLRLIRLLM 546

Query: 1329 RMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAG 1371
             +Q  R  +   +  IPS+   L        I+  +GVQ+F G
Sbjct: 547  NVQRYRAFIATFITLIPSLMPYLGTIFCVLCIYCSIGVQVFGG 589



 Score = 33.5 bits (73), Expect = 1.5
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 353 GYTSFDTFGWAFLSAFRLMTQ----DYWENLYQ------LFFVVIIFLGSFYLVNLILAI 402
           G T F ++G      F L T     D W   Y+      +FFV+ + +G +++ NLILA+
Sbjct: 244 GLTVFTSYGATLYQMFILFTTSNNPDVWIPAYKSSRWSSVFFVLYVLIGVYFVTNLILAV 303

Query: 403 VAMSY 407
           V  S+
Sbjct: 304 VYDSF 308


>At3g51940.1 68416.m05697 expressed protein 
          Length = 453

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 289 CVKVFPEDGSWGNLTDENWERFCQNETNWYGEGGDYPLCGN 329
           C+K   +D +WG  + E WE    N  +W   G D    GN
Sbjct: 266 CIKETAKDTTWGGCSGEGWEDRGWNNDSWGSGGWDNRDLGN 306


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 650  SASRNHSVTSQ--PHAYPLPRQDSSLASRPLREYEVSTTECTDEAGKVLKPSSD---NPF 704
            SA   H V S   P  YP PR     A  P+    + TT C+   GKVL PS +   N +
Sbjct: 1075 SADFVHEVISACVPPVYP-PRSGHGWACIPV----IPTTPCSHSEGKVLSPSIEAKPNCY 1129

Query: 705  IESSQQPNV 713
            + SS  P V
Sbjct: 1130 VRSSATPGV 1138


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 610 NLGSRHSSYTSHQSRLSYTSHGDLLGGGKAQTKEAR-LRGRSASRNHSVTSQPHAYPLPR 668
           N+  RH     H   +S     +     K++ ++ R  R RS SR+H    Q  + PLPR
Sbjct: 664 NMSKRHDPGKVHSVEVS--ERWERREQPKSRQRDLREKRRRSRSRDHGQDRQKRSSPLPR 721

Query: 669 QDSSLASRPLREYEVSTTECTDEAGK 694
            + + +       E S     D +GK
Sbjct: 722 AEKATSRHKRNHEERSENVVKDRSGK 747


>At1g60160.1 68414.m06777 potassium transporter family protein similar
            to potassium transporter HAK2p [Mesembryanthemum
            crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
            Transporter family member, PMID:11500563; contains Pfam
            profile PF02705: K+ potassium transporter
          Length = 827

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 1289 FIIVMVSLINFVAALCGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIF 1348
            F + ++ + N+ + L     ++   +M  +R L       R+ G+ ++ N LVQ IPSIF
Sbjct: 550  FFLTVMYIWNYGSVLKYQSEVRERISMDFMRELGSTLGTIRIPGIGLLYNELVQGIPSIF 609

Query: 1349 NVLLVCL 1355
               L+ L
Sbjct: 610  GQFLLTL 616


>At2g39300.1 68415.m04825 expressed protein ; expression supported
           by MPSS
          Length = 768

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 478 FVNQERGNQDDNTRERMSLRSDPFQDSVSTQPAHKPTATDTHDSA-RRPRKVSMASLSLP 536
           F     GN  D+ ++    + D FQ  +++      + ++   +A RR R +S A+  + 
Sbjct: 6   FFKSSSGNGTDHNKQLHKQKDDHFQRYLNSPKGLNKSQSEVSGAALRRSRSLSSAAFVID 65

Query: 537 GSPFNLRR----GSRGSHQMALXXXXXXXXXXXXXXXXLVLSTYLDAQEHLPYADDSNAV 592
           G+  N  R     SR                        VL  Y+D +EHL  +   +  
Sbjct: 66  GTSSNQHRLRNHSSRCLTPERQFKEYGSMSTCSSNVSSQVLDRYIDGEEHLERSKQKSGS 125

Query: 593 TPMSEENGA 601
              S  +G+
Sbjct: 126 LHSSSLSGS 134


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,272,894
Number of Sequences: 28952
Number of extensions: 1762750
Number of successful extensions: 5332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5320
Number of HSP's gapped (non-prelim): 13
length of query: 1969
length of database: 12,070,560
effective HSP length: 92
effective length of query: 1877
effective length of database: 9,406,976
effective search space: 17656893952
effective search space used: 17656893952
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 67 (31.1 bits)