BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001556-TA|BGIBMGA001556-PA|IPR005919|Higher eukaryotic phosphomevalonate kinase (186 letters) Database: fruitfly 52,641 sequences; 24,830,863 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY119197-1|AAM51057.1| 189|Drosophila melanogaster SD12705p pro... 150 1e-36 AE014134-3143|AAF53833.1| 189|Drosophila melanogaster CG10268-P... 150 1e-36 BT023811-1|AAZ66318.1| 971|Drosophila melanogaster LP23835p pro... 30 2.2 AY119272-1|AAM51132.1| 670|Drosophila melanogaster SD25109p pro... 30 2.2 AY118452-1|AAM49821.1| 318|Drosophila melanogaster AT09813p pro... 30 2.2 AE014296-2502|AAF49643.2| 318|Drosophila melanogaster CG7804-PA... 30 2.2 AE013599-3891|AAF47220.2| 947|Drosophila melanogaster CG30169-P... 30 2.2 M25545-4|AAA28621.1| 361|Drosophila melanogaster protein ( D.me... 28 8.9 M25545-3|AAA28624.1| 365|Drosophila melanogaster protein ( D.me... 28 8.9 M25545-2|AAA28623.1| 360|Drosophila melanogaster protein ( D.me... 28 8.9 M25545-1|AAA28622.1| 364|Drosophila melanogaster protein ( D.me... 28 8.9 M15766-1|AAA70426.1| 365|Drosophila melanogaster unknown protei... 28 8.9 AY061448-1|AAL28996.1| 361|Drosophila melanogaster LD38464p pro... 28 8.9 AE014298-679|AAF45984.2| 408|Drosophila melanogaster CG2871-PA ... 28 8.9 AE014297-4248|AAN14144.1| 361|Drosophila melanogaster CG9983-PF... 28 8.9 AE014297-4247|AAN14143.1| 361|Drosophila melanogaster CG9983-PD... 28 8.9 AE014297-4246|AAN14142.1| 365|Drosophila melanogaster CG9983-PC... 28 8.9 AE014297-4245|AAF56801.1| 365|Drosophila melanogaster CG9983-PB... 28 8.9 AE014297-4244|AAN14141.1| 360|Drosophila melanogaster CG9983-PE... 28 8.9 AE014297-4243|AAF56800.2| 364|Drosophila melanogaster CG9983-PA... 28 8.9 >AY119197-1|AAM51057.1| 189|Drosophila melanogaster SD12705p protein. Length = 189 Score = 150 bits (364), Expect = 1e-36 Identities = 70/150 (46%), Positives = 99/150 (66%), Gaps = 4/150 (2%) Query: 6 ILLFSGKRKSGKDFLTDHLRHILADKCEIIKISQPIKTHWAXXXXXXXXXXXSEGEYKEQ 65 I+L SGKRK GKD++++ L+ L + I++IS+PIK+ WA +G YKE+ Sbjct: 4 IVLISGKRKCGKDYISERLQRRLGSRSCIVRISEPIKSEWAHKLQLDLDALLGDGPYKEK 63 Query: 66 YRLEMIKWSEEMRNKDYGCFCKAACENAAIK---PVWIVSDIRRKTDIRWFKETYG-DII 121 YR +MI WS+E+R +DYG FC+ A E A + P +VSD+RRK DIRWF+ETYG + + Sbjct: 64 YRRDMIVWSDEVRAQDYGYFCRVAMEEALSRQQTPYILVSDVRRKNDIRWFRETYGPERV 123 Query: 122 RTVRITADDRTRKERGFQFQVGVDDATSEC 151 T+R+T+ TR RG+ F G+DD SEC Sbjct: 124 ITLRLTSRPETRSARGWTFTAGIDDVPSEC 153 >AE014134-3143|AAF53833.1| 189|Drosophila melanogaster CG10268-PA protein. Length = 189 Score = 150 bits (364), Expect = 1e-36 Identities = 70/150 (46%), Positives = 99/150 (66%), Gaps = 4/150 (2%) Query: 6 ILLFSGKRKSGKDFLTDHLRHILADKCEIIKISQPIKTHWAXXXXXXXXXXXSEGEYKEQ 65 I+L SGKRK GKD++++ L+ L + I++IS+PIK+ WA +G YKE+ Sbjct: 4 IVLISGKRKCGKDYISERLQRRLGSRSCIVRISEPIKSEWARKLQLDLDALLGDGPYKEK 63 Query: 66 YRLEMIKWSEEMRNKDYGCFCKAACENAAIK---PVWIVSDIRRKTDIRWFKETYG-DII 121 YR +MI WS+E+R +DYG FC+ A E A + P +VSD+RRK DIRWF+ETYG + + Sbjct: 64 YRRDMIVWSDEVRAQDYGYFCRVAMEEALSRQQTPYILVSDVRRKNDIRWFRETYGPERV 123 Query: 122 RTVRITADDRTRKERGFQFQVGVDDATSEC 151 T+R+T+ TR RG+ F G+DD SEC Sbjct: 124 ITLRLTSRPETRSARGWTFTAGIDDVPSEC 153 >BT023811-1|AAZ66318.1| 971|Drosophila melanogaster LP23835p protein. Length = 971 Score = 29.9 bits (64), Expect = 2.2 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 74 SEEMRNKDYGCFCKAACENAAIKPVWI-VSDIRRKTDIRWFKETY 117 SEE RN D +AA E++A KP + V ++ +DI FK + Sbjct: 794 SEESRNIDAKFVDEAAAEDSANKPTFCNVQSLKNTSDIEHFKHDF 838 >AY119272-1|AAM51132.1| 670|Drosophila melanogaster SD25109p protein. Length = 670 Score = 29.9 bits (64), Expect = 2.2 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 74 SEEMRNKDYGCFCKAACENAAIKPVWI-VSDIRRKTDIRWFKETY 117 SEE RN D +AA E++A KP + V ++ +DI FK + Sbjct: 493 SEESRNIDAKFVDEAAAEDSANKPTFCNVQSLKNTSDIEHFKHDF 537 >AY118452-1|AAM49821.1| 318|Drosophila melanogaster AT09813p protein. Length = 318 Score = 29.9 bits (64), Expect = 2.2 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 109 DIRWFKETYGDIIRTVRITADDRTRKERGFQF 140 D+R + ETYGD+++ I D R+ +GF F Sbjct: 122 DLREYFETYGDVVK-AEIKKDTRSGHSKGFGF 152 >AE014296-2502|AAF49643.2| 318|Drosophila melanogaster CG7804-PA protein. Length = 318 Score = 29.9 bits (64), Expect = 2.2 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 109 DIRWFKETYGDIIRTVRITADDRTRKERGFQF 140 D+R + ETYGD+++ I D R+ +GF F Sbjct: 122 DLREYFETYGDVVK-AEIKKDTRSGHSKGFGF 152 >AE013599-3891|AAF47220.2| 947|Drosophila melanogaster CG30169-PA protein. Length = 947 Score = 29.9 bits (64), Expect = 2.2 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 74 SEEMRNKDYGCFCKAACENAAIKPVWI-VSDIRRKTDIRWFKETY 117 SEE RN D +AA E++A KP + V ++ +DI FK + Sbjct: 770 SEESRNIDAKFVDEAAAEDSANKPTFCNVQSLKNTSDIEHFKHDF 814 >M25545-4|AAA28621.1| 361|Drosophila melanogaster protein ( D.melanogaster Hrb98DElocus encoding heterogeneous nuclear ribonucleoproteinisoforms, exon 5. ). Length = 361 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 115 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 168 >M25545-3|AAA28624.1| 365|Drosophila melanogaster protein ( D.melanogaster Hrb98DElocus encoding heterogeneous nuclear ribonucleoproteinisoforms, exon 5. ). Length = 365 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 119 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 172 >M25545-2|AAA28623.1| 360|Drosophila melanogaster protein ( D.melanogaster Hrb98DElocus encoding heterogeneous nuclear ribonucleoproteinisoforms, exon 5. ). Length = 360 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 114 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 167 >M25545-1|AAA28622.1| 364|Drosophila melanogaster protein ( D.melanogaster Hrb98DElocus encoding heterogeneous nuclear ribonucleoproteinisoforms, exon 5. ). Length = 364 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 118 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 171 >M15766-1|AAA70426.1| 365|Drosophila melanogaster unknown protein protein. Length = 365 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 119 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 172 >AY061448-1|AAL28996.1| 361|Drosophila melanogaster LD38464p protein. Length = 361 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 115 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 168 >AE014298-679|AAF45984.2| 408|Drosophila melanogaster CG2871-PA protein. Length = 408 Score = 27.9 bits (59), Expect = 8.9 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%) Query: 74 SEEMRNKDYGCFCKAACENAAIKPV-WIVSDIRRKTDIRWFKETYGDIIRTVRITADDRT 132 S+ ++ G + C ++ + W D RR+ F E D + R T+ ++ Sbjct: 309 SKRQSREEAGEELEIGCNESSSREFEWYDEDARRRGS---FGE---DDLGCPRATSKRQS 362 Query: 133 RKERGFQFQVGVDDATSEC 151 R+E G + Q+G D++ S C Sbjct: 363 REEAGEELQIGCDESNSVC 381 >AE014297-4248|AAN14144.1| 361|Drosophila melanogaster CG9983-PF, isoform F protein. Length = 361 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 115 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 168 >AE014297-4247|AAN14143.1| 361|Drosophila melanogaster CG9983-PD, isoform D protein. Length = 361 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 115 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 168 >AE014297-4246|AAN14142.1| 365|Drosophila melanogaster CG9983-PC, isoform C protein. Length = 365 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 119 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 172 >AE014297-4245|AAF56801.1| 365|Drosophila melanogaster CG9983-PB, isoform B protein. Length = 365 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 119 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 172 >AE014297-4244|AAN14141.1| 360|Drosophila melanogaster CG9983-PE, isoform E protein. Length = 360 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 114 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 167 >AE014297-4243|AAF56800.2| 364|Drosophila melanogaster CG9983-PA, isoform A protein. Length = 364 Score = 27.9 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 93 AAIKPVWI--VSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDD 146 A +K +++ + D + IR + + +G+I+ + I D T K+RGF F V DD Sbjct: 118 ATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAF-VEFDD 171 Database: fruitfly Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 24,830,863 Number of sequences in database: 52,641 Lambda K H 0.320 0.136 0.416 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,709,054 Number of Sequences: 52641 Number of extensions: 263139 Number of successful extensions: 413 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 406 Number of HSP's gapped (non-prelim): 33 length of query: 186 length of database: 24,830,863 effective HSP length: 81 effective length of query: 105 effective length of database: 20,566,942 effective search space: 2159528910 effective search space used: 2159528910 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 59 (27.9 bits)
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