GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001556-TA|BGIBMGA001556-PA|IPR005919|Higher eukaryotic
phosphomevalonate kinase
         (186 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13546| Best HMM Match : P-mevalo_kinase (HMM E-Value=0)            126   1e-29
SB_27282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  

>SB_13546| Best HMM Match : P-mevalo_kinase (HMM E-Value=0)
          Length = 229

 Score =  126 bits (303), Expect = 1e-29
 Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 9/184 (4%)

Query: 3   PKIILLFSGKRKSGKDFLTDHLRHILA-DKCEIIKISQPIKTHWAXXXXXXXXXXXSEGE 61
           P  + + SGKRKSGKD++ + L+ +L    CEI+++S P+K  +A              +
Sbjct: 42  PFAVCILSGKRKSGKDYVAERLKILLGKSNCEILRLSGPLKREYARIHKLDYQKLLDSSD 101

Query: 62  YKEQYRLEMIKWSEEMRNKDYGCFCKAACENA------AIKPVWIVSDIRRKTDIRWFKE 115
           YKE+YR +MIKW EE RN +   FC+ A + A        K  W+VSD RR TD+++F++
Sbjct: 102 YKEKYRKDMIKWGEEKRNAEPYYFCELAAKMAYRDAQSETKLYWLVSDARRITDLQFFQQ 161

Query: 116 TYGDIIRTVRITADDRTRKERGFQFQVGVDDATSECXXXXXXXXXXXXXXGEGRDSLEEQ 175
            Y  ++  VR+TA D  R  RG+ F  GVDDA SEC              G+  + LE  
Sbjct: 162 HYPRVVH-VRVTASDDVRMRRGWMFTNGVDDAESECGLDDVIFDVAIINNGD-NEQLENS 219

Query: 176 LDSI 179
           L S+
Sbjct: 220 LASL 223


>SB_27282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 61  EYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDI 120
           EYK+    E   W++ +       F KA  ++AAI+  W        TD ++ KE YGD+
Sbjct: 64  EYKQALHPEEF-WNQHVSKNRPAVFRKAIAKSAAIEK-W--------TD-QYLKEKYGDL 112

Query: 121 IRTVRITADDRTRKERGFQFQVGVDDAT 148
              + +  ++R++  +    +  +D+ T
Sbjct: 113 DVLIELKRENRSQGAKRMTLEAFIDNYT 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,513,523
Number of Sequences: 59808
Number of extensions: 188996
Number of successful extensions: 256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 2
length of query: 186
length of database: 16,821,457
effective HSP length: 78
effective length of query: 108
effective length of database: 12,156,433
effective search space: 1312894764
effective search space used: 1312894764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)