GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001556-TA|BGIBMGA001556-PA|IPR005919|Higher eukaryotic
phosphomevalonate kinase
         (186 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L77213-1|AAC37593.1|  192|Homo sapiens phosphomevalonate kinase ...   156   4e-38
CR541998-1|CAG46795.1|  192|Homo sapiens PMVK protein.                156   4e-38
BC007694-1|AAH07694.1|  192|Homo sapiens phosphomevalonate kinas...   156   4e-38
BC006089-1|AAH06089.1|  192|Homo sapiens phosphomevalonate kinas...   156   4e-38
AL451085-1|CAI13237.1|  192|Homo sapiens phosphomevalonate kinas...   156   4e-38
BT019976-1|AAV38779.1|  192|Homo sapiens phosphomevalonate kinas...   155   7e-38
AF026069-1|AAC60791.1|  160|Homo sapiens phosphomevalonate kinas...   124   2e-28

>L77213-1|AAC37593.1|  192|Homo sapiens phosphomevalonate kinase
           protein.
          Length = 192

 Score =  156 bits (379), Expect = 4e-38
 Identities = 74/183 (40%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 2   SPKIILLFSGKRKSGKDFLTDHLRHIL-ADKCEIIKISQPIKTHWAXXXXXXXXXXXSEG 60
           +P+++LLFSGKRKSGKDF+T+ L+  L AD C ++++S P+K  +A              
Sbjct: 7   APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS 66

Query: 61  EYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDI 120
            YKE +R +MI+W EE R  D G FC+   E  + +P+W+VSD RR +DI+WF+E YG +
Sbjct: 67  TYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGIS-QPIWLVSDTRRVSDIQWFREAYGAV 125

Query: 121 IRTVRITADDRTRKERGFQFQVGVDDATSECXXXXXXXXXXXXXXGEGRDSLEEQLDSIL 180
            +TVR+ A +++R++RG+ F  GVDDA SEC                    LEEQL++++
Sbjct: 126 TQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQRLEEQLENLI 185

Query: 181 KLV 183
           + +
Sbjct: 186 EFI 188


>CR541998-1|CAG46795.1|  192|Homo sapiens PMVK protein.
          Length = 192

 Score =  156 bits (379), Expect = 4e-38
 Identities = 74/183 (40%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 2   SPKIILLFSGKRKSGKDFLTDHLRHIL-ADKCEIIKISQPIKTHWAXXXXXXXXXXXSEG 60
           +P+++LLFSGKRKSGKDF+T+ L+  L AD C ++++S P+K  +A              
Sbjct: 7   APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS 66

Query: 61  EYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDI 120
            YKE +R +MI+W EE R  D G FC+   E  + +P+W+VSD RR +DI+WF+E YG +
Sbjct: 67  TYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGIS-QPIWLVSDTRRVSDIQWFREAYGAV 125

Query: 121 IRTVRITADDRTRKERGFQFQVGVDDATSECXXXXXXXXXXXXXXGEGRDSLEEQLDSIL 180
            +TVR+ A +++R++RG+ F  GVDDA SEC                    LEEQL++++
Sbjct: 126 TQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQRLEEQLENLI 185

Query: 181 KLV 183
           + +
Sbjct: 186 EFI 188


>BC007694-1|AAH07694.1|  192|Homo sapiens phosphomevalonate kinase
           protein.
          Length = 192

 Score =  156 bits (379), Expect = 4e-38
 Identities = 74/183 (40%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 2   SPKIILLFSGKRKSGKDFLTDHLRHIL-ADKCEIIKISQPIKTHWAXXXXXXXXXXXSEG 60
           +P+++LLFSGKRKSGKDF+T+ L+  L AD C ++++S P+K  +A              
Sbjct: 7   APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS 66

Query: 61  EYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDI 120
            YKE +R +MI+W EE R  D G FC+   E  + +P+W+VSD RR +DI+WF+E YG +
Sbjct: 67  TYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGIS-QPIWLVSDTRRVSDIQWFREAYGAV 125

Query: 121 IRTVRITADDRTRKERGFQFQVGVDDATSECXXXXXXXXXXXXXXGEGRDSLEEQLDSIL 180
            +TVR+ A +++R++RG+ F  GVDDA SEC                    LEEQL++++
Sbjct: 126 TQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQRLEEQLENLI 185

Query: 181 KLV 183
           + +
Sbjct: 186 EFI 188


>BC006089-1|AAH06089.1|  192|Homo sapiens phosphomevalonate kinase
           protein.
          Length = 192

 Score =  156 bits (379), Expect = 4e-38
 Identities = 74/183 (40%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 2   SPKIILLFSGKRKSGKDFLTDHLRHIL-ADKCEIIKISQPIKTHWAXXXXXXXXXXXSEG 60
           +P+++LLFSGKRKSGKDF+T+ L+  L AD C ++++S P+K  +A              
Sbjct: 7   APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS 66

Query: 61  EYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDI 120
            YKE +R +MI+W EE R  D G FC+   E  + +P+W+VSD RR +DI+WF+E YG +
Sbjct: 67  TYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGIS-QPIWLVSDTRRVSDIQWFREAYGAV 125

Query: 121 IRTVRITADDRTRKERGFQFQVGVDDATSECXXXXXXXXXXXXXXGEGRDSLEEQLDSIL 180
            +TVR+ A +++R++RG+ F  GVDDA SEC                    LEEQL++++
Sbjct: 126 TQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQRLEEQLENLI 185

Query: 181 KLV 183
           + +
Sbjct: 186 EFI 188


>AL451085-1|CAI13237.1|  192|Homo sapiens phosphomevalonate kinase
           protein.
          Length = 192

 Score =  156 bits (379), Expect = 4e-38
 Identities = 74/183 (40%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 2   SPKIILLFSGKRKSGKDFLTDHLRHIL-ADKCEIIKISQPIKTHWAXXXXXXXXXXXSEG 60
           +P+++LLFSGKRKSGKDF+T+ L+  L AD C ++++S P+K  +A              
Sbjct: 7   APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS 66

Query: 61  EYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDI 120
            YKE +R +MI+W EE R  D G FC+   E  + +P+W+VSD RR +DI+WF+E YG +
Sbjct: 67  TYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGIS-QPIWLVSDTRRVSDIQWFREAYGAV 125

Query: 121 IRTVRITADDRTRKERGFQFQVGVDDATSECXXXXXXXXXXXXXXGEGRDSLEEQLDSIL 180
            +TVR+ A +++R++RG+ F  GVDDA SEC                    LEEQL++++
Sbjct: 126 TQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQRLEEQLENLI 185

Query: 181 KLV 183
           + +
Sbjct: 186 EFI 188


>BT019976-1|AAV38779.1|  192|Homo sapiens phosphomevalonate kinase
           protein.
          Length = 192

 Score =  155 bits (377), Expect = 7e-38
 Identities = 74/183 (40%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 2   SPKIILLFSGKRKSGKDFLTDHLRHIL-ADKCEIIKISQPIKTHWAXXXXXXXXXXXSEG 60
           +P+++LLFSGKRKSGKDF+T+ L+  L AD C ++++S P+K  +A              
Sbjct: 7   APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS 66

Query: 61  EYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDI 120
            YKE +R +MI+W EE R  D G FC+   E  + +P+W+VSD RR +DI+WF+E YG +
Sbjct: 67  TYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGIS-QPIWLVSDTRRVSDIQWFREAYGAM 125

Query: 121 IRTVRITADDRTRKERGFQFQVGVDDATSECXXXXXXXXXXXXXXGEGRDSLEEQLDSIL 180
            +TVR+ A +++R++RG+ F  GVDDA SEC                    LEEQL++++
Sbjct: 126 TQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENHGVEQRLEEQLENLI 185

Query: 181 KLV 183
           + +
Sbjct: 186 EFI 188


>AF026069-1|AAC60791.1|  160|Homo sapiens phosphomevalonate kinase
           protein.
          Length = 160

 Score =  124 bits (298), Expect = 2e-28
 Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 1/155 (0%)

Query: 29  ADKCEIIKISQPIKTHWAXXXXXXXXXXXSEGEYKEQYRLEMIKWSEEMRNKDYGCFCKA 88
           AD C ++++S P+K  +A               YKE +R +MI+W EE R  D G FC+ 
Sbjct: 3   ADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRK 62

Query: 89  ACENAAIKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQVGVDDAT 148
             E  + +P+W+VSD RR +DI+WF+E YG + +TVR+ A +++R++RG+ F  GVDDA 
Sbjct: 63  IVEGIS-QPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE 121

Query: 149 SECXXXXXXXXXXXXXXGEGRDSLEEQLDSILKLV 183
           SEC                    LEEQL+++++ +
Sbjct: 122 SECGLDNFGDFDWVIENHGVEQRLEEQLENLIEFI 156


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,149,213
Number of Sequences: 224733
Number of extensions: 750426
Number of successful extensions: 1192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 7
length of query: 186
length of database: 73,234,838
effective HSP length: 86
effective length of query: 100
effective length of database: 53,907,800
effective search space: 5390780000
effective search space used: 5390780000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)