Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001556-TA|BGIBMGA001556-PA|IPR005919|Higher eukaryotic
phosphomevalonate kinase
(186 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-16|CAD66220.1| 187|Caenorhabditis elegans Hypothetical p... 125 2e-29
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 3.5
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 27 8.2
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 27 8.2
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 27 8.2
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 27 8.2
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 27 8.2
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 27 8.2
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 27 8.2
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 27 8.2
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 27 8.2
>Z74031-16|CAD66220.1| 187|Caenorhabditis elegans Hypothetical
protein F32D8.13 protein.
Length = 187
Score = 125 bits (302), Expect = 2e-29
Identities = 63/150 (42%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 5 IILLFSGKRKSGKDFLTDHLRHILADK---CEIIKISQPIKTHWAXXXXXXXXXXXSEGE 61
I++ SGKRKSGKD+ T+ +R +L K + IS +K +A ++G
Sbjct: 3 IVIAISGKRKSGKDYCTNLIREVLVQKRFDVSVAGISHSLKMEFAKKHGLKYEELLTDGP 62
Query: 62 YKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETYGDII 121
YKE YR +MI+W EE R KD G FC+AA + + I+SD RR+TD +F Y +
Sbjct: 63 YKELYRKDMIQWGEEARCKDSGLFCRAAISSTMDSDIVIISDCRRRTDYEYFSANYRTV- 121
Query: 122 RTVRITADDRTRKERGFQFQVGVDDATSEC 151
T+RI + RK+RG+QF GVDDA SEC
Sbjct: 122 -TIRIETSEEDRKQRGYQFVEGVDDAESEC 150
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 115 ETYGDIIRTVRITADDRTRKERGFQFQVGVDDATSE 150
E +GDI V IT D T+K RG+ F D A++E
Sbjct: 56 EQFGDIEEAVVIT-DRNTQKSRGYGFVTMKDRASAE 90
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 64 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 123
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 278 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 337
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 414 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 473
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 463 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 522
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 463 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 522
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 463 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 522
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 455 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 514
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 467 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 526
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 86 CKAACENAA---IKPVWIVSDIRRKTDIRWFKETYGDIIRTVRITADDRTRKERGFQFQV 142
CK C+ + P+ V D + K + ET G + T A + +E GF F+V
Sbjct: 467 CKNKCDGVQSQYVVPITTVPDEQSKIEEVETSETPGIVDETTTTAAPEEESEENGFFFKV 526
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,053,595
Number of Sequences: 27539
Number of extensions: 142236
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 11
length of query: 186
length of database: 12,573,161
effective HSP length: 77
effective length of query: 109
effective length of database: 10,452,658
effective search space: 1139339722
effective search space used: 1139339722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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