GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001556-TA|BGIBMGA001556-PA|IPR005919|Higher eukaryotic
phosphomevalonate kinase
         (186 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36400.2 68417.m05172 FAD linked oxidase family protein low s...    27   5.8  
At4g36400.1 68417.m05171 FAD linked oxidase family protein low s...    27   5.8  
At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At4g36400.2 68417.m05172 FAD linked oxidase family protein low
           similarity to SP|Q12627 from Kluyveromyces lactis and
           SP|P32891 from Saccharomyces cerevisiae; contains Pfam
           FAD linked oxidases, C-terminal domain PF02913, Pfam FAD
           binding domain PF01565
          Length = 559

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 58  SEGEYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETY 117
           S+G YK +     I  +  M  + Y CF  +A       P++   D +   D+ +FKE  
Sbjct: 51  SDGNYKTELHHPCISRNVGMLLQQYKCFGSSAASLIQRNPLFSSLDSK---DVSYFKEIL 107

Query: 118 GD 119
           G+
Sbjct: 108 GE 109


>At4g36400.1 68417.m05171 FAD linked oxidase family protein low
           similarity to SP|Q12627 from Kluyveromyces lactis and
           SP|P32891 from Saccharomyces cerevisiae; contains Pfam
           FAD linked oxidases, C-terminal domain PF02913, Pfam FAD
           binding domain PF01565
          Length = 559

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 58  SEGEYKEQYRLEMIKWSEEMRNKDYGCFCKAACENAAIKPVWIVSDIRRKTDIRWFKETY 117
           S+G YK +     I  +  M  + Y CF  +A       P++   D +   D+ +FKE  
Sbjct: 51  SDGNYKTELHHPCISRNVGMLLQQYKCFGSSAASLIQRNPLFSSLDSK---DVSYFKEIL 107

Query: 118 GD 119
           G+
Sbjct: 108 GE 109


>At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1184

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 69  EMIKWSEEMRNKDYGCFCKAACENAAIKPV-WIVSDIRRK--TDIRWF 113
           EM K+  E     +GC   A C+N ++K    +  D+R K   ++R+F
Sbjct: 192 EMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYF 239


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,927,905
Number of Sequences: 28952
Number of extensions: 136819
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 3
length of query: 186
length of database: 12,070,560
effective HSP length: 77
effective length of query: 109
effective length of database: 9,841,256
effective search space: 1072696904
effective search space used: 1072696904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)