Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001555-TA|BGIBMGA001555-PA|undefined
         (81 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   0.95 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   1.3  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   1.7  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    24   2.2  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    23   5.1  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    23   5.1  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    23   6.7  

>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
          Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 0.95
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 52 GLTNQGLLYKRKFKC-YDPEGFIKN 75
          GL  QGL  K+KF+  +DP    KN
Sbjct: 6  GLKQQGLAQKKKFQLEFDPSSVSKN 30


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 8   ETEAHLCGAPLRSVEHNKGASPPAHHHSSTIADIRNTARTTLGRG 52
           + EA   G P+ +V  +  AS  +HH  ++    R T     GRG
Sbjct: 428 KAEADCLGLPVSNVSESPAASNGSHHPYASGLPQRGTNTFFRGRG 472


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 8   ETEAHLCGAPLRSVEHNKGASPPAHHHSSTIADIRNTARTT 48
           +T   +      SV+   G + P     STI  I  T R+T
Sbjct: 249 DTVEEIADEEKHSVKEESGEASPQSSQQSTITSISTTTRST 289


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 52   GLTNQGLLYKRKFKCYDPEGFIKNY 76
            GL   G L   KF+ YDP+  I  Y
Sbjct: 1093 GLIRPGSLSSCKFEGYDPQNLISIY 1117


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 17  PLRSVEHNKGASPPAHHHSSTIADIR 42
           P+ ++ H    SP  HH++  + D++
Sbjct: 94  PIININHVNQTSPYTHHNAEPLHDLQ 119


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 20  SVEHNKGASPPAHHHSSTIADIRNTART 47
           ++ HNK   P    HS T   + N+ +T
Sbjct: 246 NLAHNKNIDPQIFQHSDTDNVVENSLQT 273


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 12  HLCGAPLRSVEHNKGASPPAHHHSSTIADIRNTARTTL 49
           HL G  + +++ +    PP    SST+    +T R+ L
Sbjct: 391 HLPGKRIFTIDSSYSEEPPQSSPSSTLQYTFSTVRSAL 428


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,433
Number of Sequences: 5004
Number of extensions: 10996
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 7
length of query: 81
length of database: 2,362,478
effective HSP length: 60
effective length of query: 21
effective length of database: 2,062,238
effective search space: 43306998
effective search space used: 43306998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)