GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001555-TA|BGIBMGA001555-PA|undefined
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0183 - 20999343-20999865,21000351-21000748                       26   3.3  
04_04_0261 + 24007790-24009098,24009191-24011118                       26   4.4  
08_02_0293 - 15424397-15428041                                         25   5.8  
01_03_0233 + 14042548-14044950                                         25   7.6  

>11_06_0183 - 20999343-20999865,21000351-21000748
          Length = 306

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 4  QLQRETEAHLCGAPLRSVEHNKGASPPAHHHSSTIADIRNTARTTLGRGLTNQGLLYKRK 63
          QL   +     GAP        G  PPA H   T     +++  T G G+ +    YK +
Sbjct: 36 QLAASSSVKSSGAPWLGGSGILGPQPPAPHQPRTSGAPHDSSAPTTGGGVPH---FYKLE 92

Query: 64 FKCYD 68
          F  +D
Sbjct: 93 FPKFD 97


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 8    ETEAHLCGAPLRSVEHNKGASPPAHHHSST 37
            E  A LCG PL    +   A PP+  HS +
Sbjct: 1015 EGNAALCGKPLSIRCNGSNAGPPSLEHSES 1044


>08_02_0293 - 15424397-15428041
          Length = 1214

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 8   ETEAHLCGAPLRSVEHNKGA 27
           E  + LCG PL    HN GA
Sbjct: 793 ENNSGLCGIPLNPCVHNSGA 812


>01_03_0233 + 14042548-14044950
          Length = 800

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 11  AHLCGAPLRSVEHNKGASP 29
           A LCG PLR+VE  +   P
Sbjct: 566 AQLCGVPLRAVERGRRDFP 584


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,392
Number of Sequences: 37544
Number of extensions: 76389
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 4
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)