GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001555-TA|BGIBMGA001555-PA|undefined
         (81 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)                     31   0.17 
SB_52390| Best HMM Match : Cauli_DNA-bind (HMM E-Value=6.4)            31   0.17 
SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.17 
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)                    25   8.5  
SB_17355| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  

>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
          Length = 685

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 24  NKGASPPAHH-HSSTIADIRNTARTTLGRGLTNQGLLYKRKFKCYDPEGFIK 74
           ++ A PP HH  S TI   R+  +    + LTN   +   K K YD +G +K
Sbjct: 408 SRTAGPPLHHFRSQTIKSERSYLQECWDKCLTNDIPIPHYKVKIYDDDGDLK 459


>SB_52390| Best HMM Match : Cauli_DNA-bind (HMM E-Value=6.4)
          Length = 232

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 24 NKGASPPAHH-HSSTIADIRNTARTTLGRGLTNQGLLYKRKFKCYDPEGFIK 74
          ++ A PP HH  S TI   R+  +    + LTN   +   K K YD +G +K
Sbjct: 47 SRTAGPPLHHFRSQTIKSERSYLQECWDKCLTNDIPIPHYKVKIYDDDGDLK 98


>SB_45987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 24  NKGASPPAHH-HSSTIADIRNTARTTLGRGLTNQGLLYKRKFKCYDPEGFIK 74
           ++ A PP HH  S TI   R+  +    + LTN   +   K K YD +G +K
Sbjct: 935 SRTAGPPLHHFRSQTIKSERSYLQECWDKCLTNDIPIPHYKVKIYDDDGDLK 986


>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 35   SSTIADIRNTARTTLGRGLTNQGLLYKRKFKCYDPEGFIK 74
            SST A+++NT++    + +  Q     RK K + P+  +K
Sbjct: 1011 SSTNANVKNTSKRKTQQMMEEQSTPTSRKRKAFTPKKLVK 1050


>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 9   TEAHLCGAPLRSVEHNKGASPPAHHHSSTI 38
           T A     P+R   H+    PP +HH  T+
Sbjct: 614 THALTADEPVRGELHHPNPLPPLNHHQQTL 643


>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1747

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 40  DIRNTARTTLGRGLTNQGLLYKRKF----KCYDPEGFIKN 75
           D   T R+TLG     +  +  R+F    K YDP+ F+K+
Sbjct: 654 DQEKTHRSTLGYSYGRRKGVSARQFVTKLKAYDPDAFVKD 693


>SB_17355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 32 HHHSSTIADIRNTARTTLG 50
          HHH    A  R T RTT+G
Sbjct: 47 HHHYHPTASARRTFRTTVG 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,543
Number of Sequences: 59808
Number of extensions: 89633
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 7
length of query: 81
length of database: 16,821,457
effective HSP length: 59
effective length of query: 22
effective length of database: 13,292,785
effective search space: 292441270
effective search space used: 292441270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)