GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001555-TA|BGIBMGA001555-PA|undefined
         (81 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74029-5|CAA98433.2|  520|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical pr...    27   2.1  
DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated...    27   2.1  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    26   2.7  
Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z74029-5|CAA98433.2|  520|Caenorhabditis elegans Hypothetical
           protein C45B11.1b protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 26  GASPPAHHHSSTIADI 41
           G +PP HHHSS I  +
Sbjct: 503 GNNPPTHHHSSQITTV 518


>Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical
           protein C45B11.1a protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 26  GASPPAHHHSSTIADI 41
           G +PP HHHSS I  +
Sbjct: 505 GNNPPTHHHSSQITTV 520


>DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated
           kinase PAK-2 protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 26  GASPPAHHHSSTIADI 41
           G +PP HHHSS I  +
Sbjct: 505 GNNPPTHHHSSQITTV 520


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
          protein C44H9.4 protein.
          Length = 1099

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 33 HHSSTIADIRNTARTTLGRGLTNQGLLYKRKFKCYDPEGFIKNYFE 78
          +H+S IA I+++  T+    +     +Y R F   +   F K Y +
Sbjct: 45 YHTSHIASIKSSQTTSYRSSVVQNSSVYSRTFSEKEQNAFSKFYVQ 90


>Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.4 protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 2   HFQLQRETEAHLCGAPLRSVEHNKGAS 28
           H+QL++  +A L G P  + EH   AS
Sbjct: 672 HYQLKQSEKASLTGPPENTREHVVAAS 698


>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical protein
            F29G6.3c protein.
          Length = 1453

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 7/38 (18%)

Query: 6    QRETEAHLCGAPLRSVEHNK-------GASPPAHHHSS 36
            Q   E H   AP+RSVEH++          P  HHH +
Sbjct: 1091 QLPREHHYYPAPVRSVEHHQKHVHEQHNYIPAVHHHET 1128


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 7/38 (18%)

Query: 6    QRETEAHLCGAPLRSVEHNK-------GASPPAHHHSS 36
            Q   E H   AP+RSVEH++          P  HHH +
Sbjct: 1091 QLPREHHYYPAPVRSVEHHQKHVHEQHNYIPAVHHHET 1128


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,252
Number of Sequences: 27539
Number of extensions: 62940
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 7
length of query: 81
length of database: 12,573,161
effective HSP length: 61
effective length of query: 20
effective length of database: 10,893,282
effective search space: 217865640
effective search space used: 217865640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)