GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001555-TA|BGIBMGA001555-PA|undefined
         (81 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   1.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   4.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 23  HNKGASPPAHHHSSTIADIRNTARTTLG 50
           H+  A+ P H HS+ +A     A   +G
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQIG 460


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 4   QLQRETEAHLCGAPLRSVEHNKGASPPAHHHSSTIADIRNTARTTLGRGLTNQGLLYKRK 63
           +L+ + +A    +PLR  +       P  + + T      T    L R    QGLL  +K
Sbjct: 301 RLKLDEDADGAVSPLRREKDRGSREYPTSNATDTDGTKERTEEVALDRTPVTQGLLRVKK 360


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 20  SVEHNKGASPPAHHHSSTIADIRNTARTTLGRGLTNQGLLYKRKFKCY 67
           S+E N+  +    H  +TI D RN   +      T +     R +K Y
Sbjct: 410 SMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSY 457


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 14  CGAPLRSVEHNKGASPPAHHHSST 37
           C   + S+      +PP+ HH+S+
Sbjct: 500 CSGEVASLTEYHHVAPPSGHHASS 523



 Score = 20.6 bits (41), Expect = 2.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 9   TEAHLCGAPLRSVEHNKGASPPAHHHSS 36
           TE+   G      E++  A P  HH SS
Sbjct: 496 TESTCSGEVASLTEYHHVAPPSGHHASS 523


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 4.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 13  LCGAPLRSVEHNKGASPPAHH 33
           +CG  L  V +N   SP A H
Sbjct: 251 ICGMALSPVTNNLYYSPLASH 271


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,818
Number of Sequences: 429
Number of extensions: 830
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 140,377
effective HSP length: 47
effective length of query: 34
effective length of database: 120,214
effective search space:  4087276
effective search space used:  4087276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)