GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001555-TA|BGIBMGA001555-PA|undefined
         (81 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03270.1 68415.m00280 DNA-binding protein, putative similar t...    27   1.2  
At1g63960.1 68414.m07244 hypothetical protein                          26   3.6  
At2g25440.1 68415.m03047 leucine-rich repeat family protein cont...    25   6.3  
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    25   8.3  
At1g33950.1 68414.m04208 avirulence-responsive family protein / ...    25   8.3  

>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
           Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
           II gene enhancer-binding protein)(RIPE3B-binding complex
           3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
           identical to putative helicase (atpc-2 gene) cDNA
           NCBI_gi:11191230
          Length = 639

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 8   ETEAHLCGAPLRSVEHNKGASPPAHHHSSTIADIRNTARTTLGRGLTNQGLLYKRK 63
           + +  L G  L   + NKG   PAH   +    +    ++ LG     QG++Y+ K
Sbjct: 55  DVQTGLMGKSLIEFQSNKGDVLPAHKFGNHDVVVLKLNKSDLGSSPLAQGVVYRLK 110


>At1g63960.1 68414.m07244 hypothetical protein
          Length = 101

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 6  QRETEAHLCGAPLRSVEHNKGASPPAHHHSSTIAD 40
          +RE E     A  RS  H+     P HHH++ + D
Sbjct: 59 EREREREREEALYRSQSHHDTPVCPMHHHTTIVCD 93


>At2g25440.1 68415.m03047 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to NL0E
           [Lycopersicon esculentum] gi|4235643|gb|AAD13303
          Length = 671

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 8   ETEAHLCGAPLRSVEHNKGASPPAHH 33
           E    LCG PL     +  ASP  HH
Sbjct: 592 EGNVGLCGLPLEERCFDNSASPTQHH 617


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 38  IADIRNTARTTLG--RGLTNQGLLYKRKFKCYD 68
           + D+ + +  ++G  +GL   G + KR F CYD
Sbjct: 562 MVDLLSASARSVGSSKGLQLHGTIVKRGFDCYD 594


>At1g33950.1 68414.m04208 avirulence-responsive family protein /
          avirulence induced gene (AIG1) family protein similar
          to AIG1 protein SP:P54120 (Arabidopsis thaliana), NTGP4
          GB:AAD09518 (Nicotiana tabacum); contains Pfam profile:
          PF00735 cell division protein (members of this family
          bind GTP)
          Length = 311

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 24 NKGASPPAHHHSSTIADIRNTARTTLGRGLTNQGLLYKRKF 64
          NKG +    H S    +I    RT  G+  T   L+ K+ F
Sbjct: 2  NKGGAQQKGHSSKQAENIVLVGRTGNGKSATGNSLIGKKVF 42


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,425
Number of Sequences: 28952
Number of extensions: 58656
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 12,070,560
effective HSP length: 60
effective length of query: 21
effective length of database: 10,333,440
effective search space: 217002240
effective search space used: 217002240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)