GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001554-TA|BGIBMGA001554-PA|IPR007174|Las1-like
         (144 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   7.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   10.0 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   10.0 

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 99  ENTLSKAAKNVGIPD 113
           EN L +  +N G+PD
Sbjct: 3   ENHLEQTLENAGMPD 17


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 92  LDVSITKENTLSKAAKN 108
           LD+S TKE  L K+  N
Sbjct: 310 LDLSKTKETNLEKSNLN 326


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 92  LDVSITKENTLSKAAKN 108
           LD+S TKE  L K+  N
Sbjct: 202 LDLSKTKETNLEKSNLN 218


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,794
Number of Sequences: 317
Number of extensions: 1249
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 144
length of database: 114,650
effective HSP length: 51
effective length of query: 93
effective length of database: 98,483
effective search space:  9158919
effective search space used:  9158919
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)