Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001554-TA|BGIBMGA001554-PA|IPR007174|Las1-like
(144 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 60 1e-10
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 28 0.64
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 1.5
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 2.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 2.6
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 26 2.6
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 4.5
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 6.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 6.0
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 24 7.9
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 24 7.9
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 24 7.9
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 24 7.9
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 60.5 bits (140), Expect = 1e-10
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
Query: 6 VVPWVNTEEWLKVMNLIYSENSDENEALKWLL-------LWKARCPSLPSGIESTLILLQ 58
VVPW E++L +M+ Y+E + L L W R +P +EST L+
Sbjct: 5 VVPWRLKEDFLYLMSCFYNEGQEGIPDLAALFRGVEIIQAWSTR-GRIPHSVESTSQLVS 63
Query: 59 VHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLSKA--AKNVGIPDWIV 116
I ND +LA + +I RF++ +LD + + A AK++ +P + V
Sbjct: 64 SLIS---------NDRSQKLALAVSISRFVSGLLDPIQQSQYAIPMAVLAKSIDLPTYFV 114
Query: 117 ELRHDTAHNNNLPSLSLLRDATQFGLDW 144
ELRH H LPSL +LR A Q L W
Sbjct: 115 ELRHAITH-EELPSLPVLRQAAQRALSW 141
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 27.9 bits (59), Expect = 0.64
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 30 NEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFIN 89
+EAL+ LLL R P IE L + N + D L+YS ++
Sbjct: 628 DEALR-LLLQSFRLPGESQLIERVLETFSHYYMSANPDSMSSKDAAFVLSYSIIMLNTDQ 686
Query: 90 HMLDVSITKENTLSKAAKNV-GIPD 113
H ++ + TL +NV G+ D
Sbjct: 687 HNPNIKSQRRMTLDDFCRNVRGVND 711
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 17 KVMNLIYSENSDENEALKWLLLWKARCPSLPSGIE 51
++++ + + ++ EA KW+LL RCP+ +E
Sbjct: 342 RIIDRLVEQVKNDEEAEKWVLLNGQRCPTCDRVVE 376
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 11 NTEEWLKVMNLIYSENSDENEALKWLLLWKA 41
N +E +K + +E ++N+ KW LWKA
Sbjct: 267 NKDENIKKIINYQTEEKNKNKQSKWQKLWKA 297
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 90 HMLDVSITKENTLSKAAKNVGIPDWIVELRHDTAHNNNLPSL 131
H + + + N G+P W+ E ++NLPSL
Sbjct: 431 HWYGIDFSNLQDYINSLANYGLPIWLTEFACTNWDDSNLPSL 472
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 2.6
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 24 SENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSA 83
S +S EN KWL + CP G++ L+ L+ DL D+ DH + Y
Sbjct: 96 SRDSLENVITKWLPEVSSNCP----GVKLVLVALKC---DLRGADEEQVDHSKIIDYEEG 148
Query: 84 I 84
+
Sbjct: 149 L 149
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.0 bits (52), Expect = 4.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 81 SSAIMRFINHMLD---VSITKENTLSKAAKNVGIPDWIV 116
SS +M ML VS +E L+K KN + DW++
Sbjct: 394 SSNLMDIKQKMLQQKIVSYLEEKKLAKRVKNYRLKDWLI 432
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 24.6 bits (51), Expect = 6.0
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 73 DHVLRLAYSSAIMRFINHMLDVSITKENTLSKAAKNVGIPD 113
D V + YS A+ +I HM++ S+ A K +G+ D
Sbjct: 400 DSVAKYLYS-ALFLWIVHMINASLDHNKVKRAAYKYIGVVD 439
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.6 bits (51), Expect = 6.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 85 MRFINHMLDVSITKENTLSKAAKNV 109
M+ +NH +DV +T ++ +S A K +
Sbjct: 979 MKSLNHNVDVQLTSKSLISLAEKRL 1003
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.2 bits (50), Expect = 7.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 72 NDHVLRLAYSSAIMRFINHM--LDVSITKENTLSK 104
N+ LR+ YS++ RFI LD+ I N LS+
Sbjct: 99 NNQELRIKYSTSPQRFIESEADLDLEIRSFNVLSE 133
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 3 NCVVVPWVNTEEWLKVM--NLIYSENSDENE 31
N V++PW NT E K + N N DE E
Sbjct: 637 NIVMIPWCNTTECEKEIKKNSARQVNGDEPE 667
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 7.9
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 11 NTEEWLKVMNLIYSENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPDDN 70
++E++L++ N + + +N+ WL ++++ + I+ L V + +LN D+N
Sbjct: 174 SSEKFLELGNKVQTLGKAKNKK-HWLGVYQSFGKASVDQIQKQLECYNVRMMELNKTDEN 232
Query: 71 GNDHVLRLAYSS 82
+ SS
Sbjct: 233 NESAICESQASS 244
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 24.2 bits (50), Expect = 7.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 18 VMNLIYSENSDENEALKW 35
++NL+Y N E E+L W
Sbjct: 79 ILNLLYDVNEHEPESLDW 96
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,715
Number of Sequences: 5004
Number of extensions: 28952
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 13
length of query: 144
length of database: 2,362,478
effective HSP length: 67
effective length of query: 77
effective length of database: 2,027,210
effective search space: 156095170
effective search space used: 156095170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)
- SilkBase 1999-2023 -