Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001554-TA|BGIBMGA001554-PA|IPR007174|Las1-like
(144 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 49 2e-06
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 29 1.9
09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219 28 2.6
03_03_0044 - 14021874-14022050,14022235-14022390,14023024-140232... 28 2.6
12_01_0111 - 857627-857975,858123-858334,858428-858550,858662-85... 27 5.9
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 27 5.9
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 27 7.9
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 27 7.9
09_06_0261 - 21919017-21920594 27 7.9
04_03_0908 + 20743436-20744018,20744128-20744168,20744320-207445... 27 7.9
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 48.8 bits (111), Expect = 2e-06
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 24/140 (17%)
Query: 6 VVPWVNTEEWLKVMNLIYSENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLN 65
+VPW + EW V + ++S + AL+ + W++R +LP ++ T +++ ++D
Sbjct: 25 LVPWSSWAEWRHVRDGLFS--ASPAAALRRIAAWRSR-GTLPVPVDVTAAFVEIRLRD-- 79
Query: 66 SPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKEN-TLSKAAKNVGIPDWIVELRHDTAH 124
R +N ++ K ++S+ A+ VGIP +V++RH+++H
Sbjct: 80 -----------------PFFRLVNGFVENPHKKTGYSISELAEAVGIPRVLVDIRHESSH 122
Query: 125 NNNLPSLSLLRDATQFGLDW 144
LPSL LLR A DW
Sbjct: 123 -RTLPSLRLLRLAAIKAFDW 141
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 95 SITKENTLSKAAKNVGIPDWIVELR-HDTAHNNNLPSLSLLRDATQF 140
++++EN K+A +V + VEL+ H T H N LP+ S+ R QF
Sbjct: 558 NLSQENEPDKSANDVDMLP-AVELQFHGTNHANPLPTRSIKRKLLQF 603
>09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219
Length = 215
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 41 ARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKEN 100
A C P + S ++ Q L +N D L A + + ++H++D+ TK+N
Sbjct: 32 ATCGDGPGYLRSAGVIYS-RSQHLMLVQNNNGDTPLHCAVRAGHSKMVDHLIDLVETKDN 90
Query: 101 TLSKA 105
+ S A
Sbjct: 91 SPSSA 95
>03_03_0044 -
14021874-14022050,14022235-14022390,14023024-14023203,
14023816-14024074,14024178-14024416,14025180-14025260,
14025320-14025328
Length = 366
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 78 LAYSSAIMRFINHMLDVSITKENTLSKAAKNVGIPDWIVELRHDTAHNNNLPSL 131
L + S+ I + DV I +N LS+ + +G+P + RH H + LP L
Sbjct: 287 LDHFSSTRHMILYYEDV-IRDQNALSRVQEFLGVPAMRLSSRHVKIHTSPLPDL 339
>12_01_0111 -
857627-857975,858123-858334,858428-858550,858662-858856,
859259-859498
Length = 372
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 19 MNLIYSEN-SDENEALKWLLLWKARCPSLPSG 49
+N + +E D+ L W L+ + RCPS PSG
Sbjct: 151 INTVTNETYKDDPTILAWELINEPRCPSDPSG 182
>04_03_0496 +
16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 19 MNLIYSENSDENEALKWLLLWKARCPSLPSGIESTLILLQ 58
+ L SE + EAL ++ W R P++ G E+T+ +L+
Sbjct: 376 VELTRSEFVEAQEALAQMINWFTRFPTILRGCENTIEMLR 415
>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 72 NDHVLRLAYSSAIMRFINHMLDVSITKENTLSKAAKNVGIPDWIV 116
+D+V+ + RFINH DV E SK K+ G +W++
Sbjct: 1093 DDYVVDATKRGGLARFINHSCDVPRINE-LGSKVYKSGGNCNWVL 1136
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 85 MRFINHMLDVSITKENTLSKAAKNVGIPDWIVELRHDTAHN-NNLP 129
+R++ D I K S+ +N+GI DW EL +D H + LP
Sbjct: 259 LRWVYEQGDCVIVKSFNKSRLRENLGIFDW--ELTNDDRHKISTLP 302
>09_06_0261 - 21919017-21920594
Length = 525
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 25 ENSDENEALKWLLLWKARCPSLPSGIESTL 54
+NS E+E WLL CP IE L
Sbjct: 276 KNSSESETATWLLAHTKHCPKCRLPIEKNL 305
>04_03_0908 +
20743436-20744018,20744128-20744168,20744320-20744588,
20744793-20744832
Length = 310
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 44 PSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENT 101
P P G+ + L VH N +D ++H+ L S IM N L + T
Sbjct: 190 PLRPEGVTAKLACTAVHCVGRNRSEDFRSNHMAVLHQQSTIMLVGNQALVAKVQVSGT 247
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,372,377
Number of Sequences: 37544
Number of extensions: 161627
Number of successful extensions: 366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 11
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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