GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001554-TA|BGIBMGA001554-PA|IPR007174|Las1-like
         (144 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)                     33   0.12 
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)                   31   0.49 
SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    28   3.4  
SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)                     27   6.0  

>SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)
          Length = 584

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 21  LIYSENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAY 80
           L ++ + D ++ ++WLL    +  +   G E T   L  +  D+N  D  G   ++  A 
Sbjct: 178 LHWAVDGDRDDCIRWLLNCGVKVIATVDGSEHTARTLLDYGADVNKRDKTGRTALMAAAL 237

Query: 81  SSAI---MRFINHMLDVSITKENTLSKAAKNVGIPDWIVELR 119
           +  +      I H  D ++T E ++  ++   G+   ++E R
Sbjct: 238 NGNLRLCQLLIQHGADQTLTNEVSIKASSGTQGVAGSLMEER 279


>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
          Length = 560

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 63  DLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLSKAAKNVGIPDWIVELRHDT 122
           D N  DDN ND  LR A S A +R    M       +N L + AK + +P+ + +     
Sbjct: 466 DANDDDDNINDCALRSASSMAAVRQPRKMAARCRAGKNKL-RQAKRLNVPNPVKDFNMAE 524

Query: 123 AHNNNL 128
             NN L
Sbjct: 525 NINNQL 530


>SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 35 WLLLWKARCPSLPSGIESTLI 55
          WL LWK+R  S  SG+++TL+
Sbjct: 58 WLSLWKSRVDSACSGLKATLL 78


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 52   STLILLQVHIQDLNSPDDNGNDHVLRLAYSSAI---MRFINHMLDVSITKEN 100
            +T + L+  I  L +P D G+DH+    Y S+    ++  +  L+V +TK+N
Sbjct: 1889 ATDVALEKGIYILYTPSDEGDDHIEWYIYPSSTYIDLKKTHIRLEVKLTKDN 1940


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 63   DLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLSKAAKNVGIP 112
            D+ S D N      R+  S +I+  +N  LD   TKE TL   A++VG+P
Sbjct: 1477 DILSGDKNST---FRVTESGSII--LNKSLDYEQTKEYTLLLRARDVGLP 1521


>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 59  VHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLS-KAAKNVGIPDW 114
           VH Q   +      +  +R A SS  + F  ++LDV + ++   S KAA+N G+ DW
Sbjct: 454 VHTQKSPNVSAFAIEKSIRQANSSGTLGF--NVLDVRVAEKQIPSTKAAQNDGLKDW 508


>SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 50  IESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAI---MRFINHMLDVSITKEN-TLSKA 105
           + +T + L+  I    +P D G+DH+    Y S+    ++  +  L+V +TK+N T   +
Sbjct: 247 LPATDVALEKGIYIPYTPSDEGDDHIEWYIYPSSTYIDLKKTHIRLEVKLTKDNDTNLTS 306

Query: 106 AKNVGIPDWIVE--LRHDTAHNNNLPSLSLLRDATQFGL 142
            +NV   +  +   ++      NN P ++L  D+   GL
Sbjct: 307 GENVAFVNNALHSMIKQVKVELNNRP-VTLQSDSATVGL 344


>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22 IYSENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSP 67
          I ++  D+N  + W+ +W    P LP GI+S +I    H    + P
Sbjct: 49 ILTDIMDDNFEVLWVQIW---LPRLPRGIQSIIIGTVYHPPSSSDP 91


>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
          Length = 349

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 72  NDHVLRLAYSSAIMRFINHMLDVSITKENTLSKA 105
           NDH+L++   +   R  +HML    TK+ TL +A
Sbjct: 129 NDHMLQVRSHAPGERVNDHMLQTLQTKDTTLQEA 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,093,987
Number of Sequences: 59808
Number of extensions: 192371
Number of successful extensions: 383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 10
length of query: 144
length of database: 16,821,457
effective HSP length: 76
effective length of query: 68
effective length of database: 12,276,049
effective search space: 834771332
effective search space used: 834771332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)