GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001554-TA|BGIBMGA001554-PA|IPR007174|Las1-like
         (144 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032655-4|CAB63413.2|  485|Caenorhabditis elegans Hypothetical ...    56   1e-08
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    30   0.56 
AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical ...    29   1.7  
U20861-16|AAA62300.1|  331|Caenorhabditis elegans Dynactin compl...    27   3.9  
AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z75526-4|CAA99770.1|  360|Caenorhabditis elegans Hypothetical pr...    27   6.9  
EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folat...    27   6.9  
Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>AL032655-4|CAB63413.2|  485|Caenorhabditis elegans Hypothetical
           protein Y6B3B.9 protein.
          Length = 485

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 10/140 (7%)

Query: 14  EWLKVMNLIYSEN-SDENEALKWLLLWKARC-PSLPSGIESTLILLQVHIQDLNSPDDNG 71
           EW  V  L  S    D  E +  L  W +R   + P  I  + +LLQ    +L S     
Sbjct: 17  EWKYVRQLFRSRRIEDVKECVIILATWISRTGENTPVAISCSHVLLQAIYAELLSTGMCE 76

Query: 72  NDHV-----LRLAYSSAIMRFINHMLDVSITKEN--TLSKAAKNVGIPDWIVELRHDTAH 124
           ++       LR  +  AI+RF+N++ ++  T      +  A K+ GIP  IV++RH   H
Sbjct: 77  SERYMAIDDLRSKHGYAIVRFVNYVNEMGQTGATLKNMVHAVKSFGIPKKIVDIRHAITH 136

Query: 125 NNNLPSLSLLRDATQFGLDW 144
             N P ++ LR AT F LDW
Sbjct: 137 -QNCPDIAELRYATNFCLDW 155


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 44   PSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLS 103
            P+LP+ +ES L  +   +  LN P+ + +DH   +   S ++  + H+++  +     + 
Sbjct: 2579 PTLPNSLESDLSSIWTSL--LNCPEPSPSDHFFLIGGHSLLLVRLRHLIETKLGISLKVP 2636

Query: 104  KAAKNVGIPDWI 115
            +  +N+   D +
Sbjct: 2637 EILQNLKFSDML 2648


>AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK185.1 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 23  YSENSDENEALKWLLLWKA-RCPSLPSGIESTLILLQVHIQDLNSPDD 69
           + E+ DE EA    + W+  +CP      E+T  LL+  ++D   P D
Sbjct: 62  FDEDGDEIEATATKIEWQPLKCPKCHRNSENTRKLLEHLVEDHGRPQD 109


>U20861-16|AAA62300.1|  331|Caenorhabditis elegans Dynactin complex
           component protein2 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 25  ENSDE--NEALKWLLLWKARCPSLPSGIESTLILLQVHIQ 62
           EN D+  +E L+ +  W   C SLPS +     L ++H Q
Sbjct: 234 ENLDKKVDEILELMQKWDVACSSLPSNVNKVKALNRLHEQ 273


>AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical
           protein T21D12.9c protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/36 (47%), Positives = 18/36 (50%)

Query: 33  LKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPD 68
           LKWL L   R  SLPSG    L  L+  I   NS D
Sbjct: 317 LKWLSLHSNRIQSLPSGSFRVLRQLEELILSANSID 352


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/36 (47%), Positives = 18/36 (50%)

Query: 33  LKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPD 68
           LKWL L   R  SLPSG    L  L+  I   NS D
Sbjct: 317 LKWLSLHSNRIQSLPSGSFRVLRQLEELILSANSID 352


>Z75526-4|CAA99770.1|  360|Caenorhabditis elegans Hypothetical
           protein C06H2.4 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 12  TEEWLKVMNLIYSENSDENEALKWLLLWK-ARCPSLPSGIESTLILLQVHIQDL-NSPDD 69
           T E+ K ++      S   E LKW L W  A C     G+       Q   ++L N+PDD
Sbjct: 221 TREYFKKISEELQICSKNQELLKWSLWWALASC-----GVYQVQNYTQSLWKELQNNPDD 275

Query: 70  --NGNDHVLRLAYSSAIMRFINHM 91
             NG    +  A  + +  FI+H+
Sbjct: 276 VANGVVEFVNTALGAFLSLFIHHL 299


>EF409995-1|ABN58742.1|  410|Caenorhabditis elegans reduced folate
           carrier protein.
          Length = 410

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 12  TEEWLKVMNLIYSENSDENEALKWLLLWK-ARCPSLPSGIESTLILLQVHIQDL-NSPDD 69
           T E+ K ++      S   E LKW L W  A C     G+       Q   ++L N+PDD
Sbjct: 221 TREYFKKISEELQICSKNQELLKWSLWWALASC-----GVYQVQNYTQSLWKELQNNPDD 275

Query: 70  --NGNDHVLRLAYSSAIMRFINHM 91
             NG    +  A  + +  FI+H+
Sbjct: 276 VANGVVEFVNTALGAFLSLFIHHL 299


>Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical
           protein C54E10.5 protein.
          Length = 420

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 57  LQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLSKA 105
           L  + ++    ++N  ++  RL   + +M+ +N ML + + +ENT+  A
Sbjct: 357 LHSYYEEAARKEENPKNYASRL---TKMMQIVNEMLSIQLKRENTMDIA 402


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 82  SAIMRFINHMLDVSITKENTLSKAAK 107
           S ++  ++H+LD+++  EN ++K  K
Sbjct: 277 SGVIELLSHLLDINVAYENLVTKNEK 302


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,753,357
Number of Sequences: 27539
Number of extensions: 142068
Number of successful extensions: 349
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 10
length of query: 144
length of database: 12,573,161
effective HSP length: 75
effective length of query: 69
effective length of database: 10,507,736
effective search space: 725033784
effective search space used: 725033784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)