GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001554-TA|BGIBMGA001554-PA|IPR007174|Las1-like
         (144 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   0.73 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   6.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   6.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   9.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   9.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    20   9.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    20   9.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   9.0  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 30  NEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSP 67
           N  LKWL+ W  +   LPS  + +L+ +  H    ++P
Sbjct: 280 NNNLKWLVNWGEQWGFLPS--KDSLVFVDNHDTQRDNP 315


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 14  EWLKVMNLIYSENSDENEALKWLLLWK 40
           +WL+V+ L  + + + ++   W + WK
Sbjct: 653 KWLQVLALWLNHSPNYDQVTNWYMGWK 679


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 4  CVVVPWVNTEEWLKVMNLIYSENSDENEALKWL 36
          C++   +  ++++K+  L+  E+  E    K+L
Sbjct: 40 CIIHMGLTFKDFIKMQELLQEEDISEGNIKKYL 72


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
          protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 18 VMNLIYSENSDENEALKWLLLWKARCPSLPSG 49
          ++ L+   +S   E LK +  WKA   + P+G
Sbjct: 9  ILFLLAISDSQAQEKLKNIYSWKALEFAFPNG 40


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 112 PDWIVELRHDTAHNNN 127
           P  I  L ++T HNNN
Sbjct: 78  PKIISSLSNNTIHNNN 93


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 112 PDWIVELRHDTAHNNN 127
           P  I  L ++T HNNN
Sbjct: 78  PKIISSLSNNTIHNNN 93


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 112 PDWIVELRHDTAHNNN 127
           P  I  L ++T HNNN
Sbjct: 79  PKIISSLSNNTIHNNN 94


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 112 PDWIVELRHDTAHNNN 127
           P  I  L ++T HNNN
Sbjct: 79  PKIISSLSNNTIHNNN 94


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 112 PDWIVELRHDTAHNNN 127
           P  I  L ++T HNNN
Sbjct: 79  PKIISSLSNNTIHNNN 94


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 112 PDWIVELRHDTAHNNN 127
           P  I  L ++T HNNN
Sbjct: 79  PKIISSLSNNTIHNNN 94


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 112 PDWIVELRHDTAHNNN 127
           P  I  L ++T HNNN
Sbjct: 312 PKIISSLSNNTIHNNN 327


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,544
Number of Sequences: 429
Number of extensions: 1764
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 144
length of database: 140,377
effective HSP length: 52
effective length of query: 92
effective length of database: 118,069
effective search space: 10862348
effective search space used: 10862348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)