GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001552-TA|BGIBMGA001552-PA|IPR006539|Phospholipid-
translocating P-type ATPase, flippase, IPR001757|ATPase, P-type,
K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
         (637 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.62 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.9  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   4.4  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   4.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   7.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 0.62
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 12  STNNYIKTSKYSIITFLPLNLLEQFQRLANFYFLCLLVLQLIPAISSLTPITTAIPLIGV 71
           S++N  K S     T   LN+   F R+ N   + LL+      +  L P+    P    
Sbjct: 253 SSDNMSKKSPVRKATLF-LNMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSW 311

Query: 72  LALTAVKDAY 81
           +A+  ++D++
Sbjct: 312 VAINELQDSF 321


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 30  LNLLEQFQRLANFYFLCLLVLQLIPAISSLTPITTAIPLIGVLALTAVKDAY 81
           LN+   F R+ N   + LL+      +  L P+    P    +A+  ++D++
Sbjct: 238 LNMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSWVAINELQDSF 289


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 89  NDSQVNHRRAKTLRNGKLVEEKWASVQVGDV 119
           +D++++     T R  KLV+  WA V+  +V
Sbjct: 14  DDNRIDQATGLTERQKKLVQNTWAVVRKDEV 44


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 89  NDSQVNHRRAKTLRNGKLVEEKWASVQVGDV 119
           +D++++     T R  KLV+  WA V+  +V
Sbjct: 14  DDNRIDQATGLTERQKKLVQNTWAVVRKDEV 44


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 412 GETLEINESSEPLDFSFNPEYEPEF 436
           GE L  N  S  +DFS N ++ P F
Sbjct: 356 GENLH-NHQSFGMDFSLNEDFYPTF 379


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,435
Number of Sequences: 429
Number of extensions: 7266
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 637
length of database: 140,377
effective HSP length: 62
effective length of query: 575
effective length of database: 113,779
effective search space: 65422925
effective search space used: 65422925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)