GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001551-TA|BGIBMGA001551-PA|IPR000626|Ubiquitin,
IPR006636|Heat shock chaperonin-binding,
IPR000449|Ubiquitin-associated, IPR008927|6-phosphogluconate
dehydrogenase, C-terminal-like, IPR009060|UBA-like
         (523 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     28   0.16 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   8.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 0.16
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 356 PMFANNPQLQDQIRTMMPQLLAQLQNPEMQQMMSNPQALNALLQIQQGMEQLRTAA 411
           PM   +PQ Q  I+T+ PQ+     +P M+  + NP    AL+Q Q   +   T++
Sbjct: 397 PMATTSPQSQSTIQTLRPQVSPDRTSP-MEYRLYNP----ALIQSQPSPQYPSTSS 447


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 313 SLLQQMSENPRLVQSMLSAPYTNSM----------LQALSADPEMAS-QLINQNPMFANN 361
           SL +    NP+L +S+L   Y N+M             +  +P ++  Q + +      N
Sbjct: 670 SLGKLTETNPKLARSVLYKIYLNTMESHEVRCTAVFLLMKTNPPLSMLQRMAEFTKLDTN 729

Query: 362 PQLQDQIRTMMPQLLAQLQNPEMQQMMSNPQALNALL 398
            Q+   +++ + Q L +L++PE + +    +++N LL
Sbjct: 730 RQVNSAVKSTI-QSLMKLKSPEWKDLAKKARSVNHLL 765


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 161 NMRSLITSNPQMQDLMSRNPEIS-HMLNNPELLRQTM-ELARNPAMLQELMRSHDRALSN 218
           ++R L  S  ++  L   +P +    L    L R  + E+A +      ++R+ + + ++
Sbjct: 213 DIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNS 272

Query: 219 LESIPGGYNALQRMYRDI 236
           L+S+P G  A  R  R+I
Sbjct: 273 LDSLPEGLFASTRDLREI 290


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 319 SENPRLVQSMLSAPYTNSMLQALSA 343
           S NP  +Q+  ++P T S+  +LSA
Sbjct: 21  SANPGTIQACTTSPATASLESSLSA 45


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.128    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,732
Number of Sequences: 429
Number of extensions: 3446
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 523
length of database: 140,377
effective HSP length: 61
effective length of query: 462
effective length of database: 114,208
effective search space: 52764096
effective search space used: 52764096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)