GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001548-TA|BGIBMGA001548-PA|IPR000980|SH2 motif,
IPR001245|Tyrosine protein kinase, IPR000719|Protein kinase,
IPR008266|Tyrosine protein kinase, active site, IPR011009|Protein
kinase-like
         (514 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...   132   6e-33
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   8.9  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   8.9  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    22   8.9  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   8.9  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score =  132 bits (319), Expect = 6e-33
 Identities = 63/185 (34%), Positives = 102/185 (55%), Gaps = 2/185 (1%)

Query: 329 INFAFDACCGMEYLERQRVVHRDLAARNVLISAEGTAKVADFGXXXXXXXXXXXXXXXXX 388
           ++ A     GME+L + RVVHRDLAARNVL+    T KV+DFG                 
Sbjct: 595 LSIARQVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFGLSRDVYQDNVYCKNGG- 653

Query: 389 QAKLPIKWTAPEALKYNKFSNKSDMWSFGILLWEIYSFGRVPYPRIPLAEVVRHVERGYR 448
             KLP++W A E+L + +++  SD+WSFG+LLWEI + G  PY  +  +E++  ++ G R
Sbjct: 654 -GKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSELLDFLKSGNR 712

Query: 449 MEAPEGCPPGPYELMRAAWHADPASRPTFLHMRRNLADIRDHTPAQLQLWELSLVVSYDL 508
           +  P  C P  Y +M   W   P +RPTF  + ++L  + ++    LQ+  +   +++++
Sbjct: 713 LARPANCSPDLYAVMLNCWKECPKNRPTFTELSKSLEGLLENVAQYLQIENVEQTLNHEI 772

Query: 509 EGARP 513
           +   P
Sbjct: 773 KKVIP 777



 Score = 52.8 bits (121), Expect = 5e-09
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 11/147 (7%)

Query: 223 RWKIDERDLEIRENIGKGEFGDVMLGIL-----NGTQKVAVKILKDR---EAASKFRAEA 274
           +W++    L  +  IG+G FG V    L     N TQ VAVK+LK+    E   +F  E 
Sbjct: 443 QWELGPLKLSFQGVIGEGAFGIVRRAFLDLKEDNKTQ-VAVKMLKESPTSEEIRQFTQEI 501

Query: 275 SVMASLK-HENLVRLLGLVFTSSG-GTCLVTEHCAQGSLLDYLRSRGRHYVTQLNQINFA 332
           ++M S++ H  +V L+G V      G  LV E+C++G L  YLR+    +     Q  + 
Sbjct: 502 NIMKSVRQHPYIVSLIGCVTEGRAEGPLLVVEYCSRGDLQTYLRTAWDKFTNMQQQFAYI 561

Query: 333 FDACCGMEYLERQRVVHRDLAARNVLI 359
            ++     Y   +     +++  N  I
Sbjct: 562 DESSNSSNYFANKTYDFHNMSFENDFI 588


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 2   SSSVRTPAPAATVPSAMHTSQTAPAVTKGQSDVLVNSSVQNPPPAGNRLVNMTQWPW 58
           +SSV + A A+   +A    Q A AV     D L NS  Q   P G  + ++ ++PW
Sbjct: 85  ASSV-SAASASMAVAAQFYHQAASAVV----DPL-NSCSQPAAPGGQPIPDIPRYPW 135


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 2   SSSVRTPAPAATVPSAMHTSQTAPAVTKGQSDVLVNSSVQNPPPAGNRLVNMTQWPW 58
           +SSV + A A+   +A    Q A AV     D L NS  Q   P G  + ++ ++PW
Sbjct: 144 ASSV-SAASASMAVAAQFYHQAASAVV----DPL-NSCSQPAAPGGQPIPDIPRYPW 194


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 2   SSSVRTPAPAATVPSAMHTSQTAPAVTKGQSDVLVNSSVQNPPPAGNRLVNMTQWPW 58
           +SSV + A A+   +A    Q A AV     D L NS  Q   P G  + ++ ++PW
Sbjct: 85  ASSV-SAASASMAVAAQFYHQAASAVV----DPL-NSCSQPAAPGGQPIPDIPRYPW 135


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 2   SSSVRTPAPAATVPSAMHTSQTAPAVTKGQSDVLVNSSVQNPPPAGNRLVNMTQWPW 58
           +SSV + A A+   +A    Q A AV     D L NS  Q   P G  + ++ ++PW
Sbjct: 144 ASSV-SAASASMAVAAQFYHQAASAVV----DPL-NSCSQPAAPGGQPIPDIPRYPW 194


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,641
Number of Sequences: 317
Number of extensions: 4636
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 514
length of database: 114,650
effective HSP length: 60
effective length of query: 454
effective length of database: 95,630
effective search space: 43416020
effective search space used: 43416020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)