Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001547-TA|BGIBMGA001547-PA|IPR004273|Dynein heavy chain,
IPR010987|Glutathione S-transferase, C-terminal-like,
IPR011072|Protein kinase PKN/PRK1, effector
         (1347 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.78 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   7.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   9.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 16/74 (21%), Positives = 35/74 (47%)

Query: 104 LRNELQALEDQAQSNVTAGNEVRELIAQLEKSIASYKEEYAQLISQAQAIKTDLENVQAK 163
           L++ L  L D  + ++   +     ++    ++ + K+  +++I Q   +   LENV A 
Sbjct: 319 LQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKVIDQHSQLIDTLENVLAI 378

Query: 164 VDRSIALLKSLVIE 177
           VDR +     L ++
Sbjct: 379 VDRLMDETNQLTLQ 392


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 1236 LQVTIPDPGTPTENAQTEWSFSVTGLKLQGATVKGNRLLLTNTIMVDLPLTVLTWVRGPE 1295
            L+VT P  G P E+   E    V  +  +        L++ N   +    T     R  +
Sbjct: 508  LRVTCPVAGYPIESIVWERDTRVLPINRKQKVFPNGTLIIENVERMSDQATYTCVARNAQ 567

Query: 1296 PASNSHTLTLPVYLNSARTELLFTVRLPVAPGQ 1328
              S   TL + V +     +  FT +LP+  G+
Sbjct: 568  GYSARGTLEVQVMVPPTIQQFSFT-KLPMNAGE 599


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 341 LNRELR--RTGGRVLITLGDQDIDLSPSFVIFLSTRDPTVEFPPDM 384
           +NR  R  +T G + + +G       P F+++L+T    VE PPD+
Sbjct: 295 INRVARETKTAGTLAVVVGGFVACWLPFFILYLATPFVPVE-PPDI 339


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,912
Number of Sequences: 429
Number of extensions: 15299
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 3
length of query: 1347
length of database: 140,377
effective HSP length: 66
effective length of query: 1281
effective length of database: 112,063
effective search space: 143552703
effective search space used: 143552703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)