GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001547-TA|BGIBMGA001547-PA|IPR004273|Dynein heavy chain,
IPR010987|Glutathione S-transferase, C-terminal-like,
IPR011072|Protein kinase PKN/PRK1, effector
         (1347 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    25   3.5  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    25   3.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   6.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   6.1  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 500 CSSIYFTMDSLNQIHFLYQYSLKMFLDIFSSVLIC 534
           C    F  D+L  ++F  Q++    L+I +   +C
Sbjct: 254 CYDSGFNSDNLTDVYFTLQWAFLQILEILALAYLC 288


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 734 ILCSVPGYDASGRVDDMATELNKPLSSIAIGSAEGFNQAERAINTACKTGRWVMLKN 790
           + CSV  +  S  + D+AT +   +SS+ IG           INT+    +++   N
Sbjct: 51  VYCSVTFFALSELLTDLATSILLKVSSLLIGFCASIYVGTVWINTSINGTKFIEFIN 107


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
            transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 1180 FAQRVTQLAEVADAVAAKRLQNVPVWLGG 1208
            ++QR+ ++ EV   +A  + QN P+ + G
Sbjct: 187  YSQRMARVEEVISDLALSKCQNTPIGILG 215


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
            transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 1180 FAQRVTQLAEVADAVAAKRLQNVPVWLGG 1208
            ++QR+ ++ EV   +A  + QN P+ + G
Sbjct: 187  YSQRMARVEEVISDLALSKCQNTPIGILG 215


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,559
Number of Sequences: 317
Number of extensions: 11982
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 4
length of query: 1347
length of database: 114,650
effective HSP length: 65
effective length of query: 1282
effective length of database: 94,045
effective search space: 120565690
effective search space used: 120565690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)