GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001546-TA|BGIBMGA001546-PA|IPR013594|Dynein heavy chain,
N-terminal region 1, IPR013602|Dynein heavy chain, N-terminal region
2, IPR011704|ATPase associated with various cellular activities,
AAA-5, IPR003593|AAA ATPase
         (3072 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    26   3.5  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   6.1  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 protein.
          Length = 980

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 1058 RTLEFLTEWERNKPTDGSTRPEDALSRL-QAMETRYTRLKDERDNVAKAKEALELHDTGS 1116
            + L ++T W + +P  G   PED    L   +   +  LKD +   A  K+  E++D   
Sbjct: 523  QVLCYITSWSQKRPGAGKFTPEDINPSLCTHIIYAFATLKDHKLAEASDKDP-EMYDRVV 581

Query: 1117 SINNERMTVVLEELQDLRGVWQQLEAMLNELKELPARLR--MYDSYEFVRK 1165
            ++  +     L+ L  + G W        EL     R+   +YD+ +F+R+
Sbjct: 582  ALREKNPD--LKILLAIGG-WAFGSTPFKELTSNVFRMNQFVYDAIDFLRE 629


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 781 PSLEEARFQLMRQMFAWQAIVTSLHRLQSTRYQVGVARAQTATYRNLLTKLPGGSA 836
           P+  ++  + ++ + A   + TS++   STR+    A A+     +L+ K  G SA
Sbjct: 260 PASTQSLSRWIKMVLAESGVDTSIYTAHSTRHAATSAAARKGISLDLIRKTAGWSA 315


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,219
Number of Sequences: 317
Number of extensions: 28148
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 3
length of query: 3072
length of database: 114,650
effective HSP length: 70
effective length of query: 3002
effective length of database: 92,460
effective search space: 277564920
effective search space used: 277564920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)