Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001545-TA|BGIBMGA001545-PA|IPR007110|Immunoglobulin-like
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    28   0.74 
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|...    27   1.3  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    27   2.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   3.0  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   6.9  

>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 385

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 13 TVGVHTYSSDARFAALHADGSDEWTLRVSPAQPRDSGAYECQVST 57
          +V V T  S  R+  +++ GS E+T  ++P  P  S +    +ST
Sbjct: 22 SVSVET-GSCVRYTTIYSSGSSEFTSTITPETPSSSSSTFVPIST 65


>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 102 PPRGKIRILQNVIEFSDSFRKNENSITKVIKDD----IFQLY 139
           PP G   I   +IEF D  R+ EN++ K  K +    IFQL+
Sbjct: 12  PPDGFDEIEPTLIEFQDRMRQIENTMGKGTKTEMLAPIFQLH 53


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 66  RLTVVVSKAEILSGPE--LFVRAGSDINLTCVAKHAPDPPRGKI 107
           +L V V+K   L+G E  LFV +G+  N  C+  H   PP   I
Sbjct: 65  KLEVYVAK---LTGKEAALFVTSGTQGNQLCIRSHLHQPPHSII 105


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 143 PRRAGGKLRTARGHQRRNRTADENKSTPHS 172
           P+RAG  + TA  H RR  +A  +  +P S
Sbjct: 162 PQRAGAGVSTATSHTRRRSSAGTDPFSPVS 191


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 101 DPPRGKIRILQNVIEFSDSFRKNENSITKVIKDDIFQLYLLVPRRAGGKLRTARGHQRRN 160
           +PP   +      IE   + +K +N + + IKD++ +        + G   +    + ++
Sbjct: 454 EPPSHVLDASSETIEVIQTIKKLQNQVPETIKDEVGKKNTAF---SPGTSLSTNHVKTKS 510

Query: 161 RTADENKSTPHS 172
           R+A  N ++P S
Sbjct: 511 RSAHNNSTSPFS 522


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 862,896
Number of Sequences: 5004
Number of extensions: 32872
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 5
length of query: 187
length of database: 2,362,478
effective HSP length: 69
effective length of query: 118
effective length of database: 2,017,202
effective search space: 238029836
effective search space used: 238029836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)