Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001545-TA|BGIBMGA001545-PA|IPR007110|Immunoglobulin-like
(187 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0217 - 18158217-18158705 30 1.00
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211... 28 4.0
08_01_0801 - 7750548-7751708 28 4.0
08_01_0220 - 1751367-1752854 28 5.3
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 28 5.3
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 27 9.3
06_02_0280 - 13708651-13708839,13708895-13709164,13709889-137104... 27 9.3
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 27 9.3
>06_03_0217 - 18158217-18158705
Length = 162
Score = 30.3 bits (65), Expect = 1.00
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 39 RVSPAQPRDSGAYECQVSTEPKISLSFRLTVVVSKAEILSGPELFVRAGSDINLTCVAKH 98
R P P C ++ + L FR + + I P + A +D L A
Sbjct: 44 RPFPLSPAALSPSRCYLNVPRALLLRFRRSPLALTVGIGIAPSHLLSAVAD-ELRFTAAV 102
Query: 99 APD--PPRGKIRILQNVIEFSDSFRKNENSITKVIKDDIFQLYLLVPRRAGGKLRTARGH 156
APD P R +R L+ V+ D R + + + D + L VP RA LR R
Sbjct: 103 APDFLPTRRHLRRLRRVVV--DPVRSSVS-----LADRRSTVALAVPNRAAAFLRFGRRS 155
Query: 157 QRRNR 161
+RR R
Sbjct: 156 RRRRR 160
>11_05_0058 +
18719852-18719929,18720032-18720889,18720969-18721118,
18722248-18722496,18722531-18722575,18722576-18722638
Length = 480
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 3 WIRKRDLHILTVGVHTYSSDARFAALHADGS 33
WIR ++HI + + Y RF + +GS
Sbjct: 243 WIRALEIHIQNLVIFNYHGSVRFRIIQGEGS 273
>08_01_0801 - 7750548-7751708
Length = 386
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 59 PKISLSFRLTVVVSKAEILSGPELFVRAGSDINLTCVAKHAPDPPRGKIRI 109
P++ +S + +V + + S P+ F+R C A H PRG+I +
Sbjct: 98 PRVWVSCEVKLVDQRTGVASTPQPFLRYALAFGDKCKALHCMMIPRGQIEV 148
>08_01_0220 - 1751367-1752854
Length = 495
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 128 TKVIKDDIFQLYLLVPRRAGGKLRTA 153
T +I D+F +LLV AGG LR A
Sbjct: 18 TLLISGDLFPYFLLVALEAGGPLRAA 43
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 84 VRAGSDINLTCVA-KHAPDPPRGKIRILQNV---IEFSDSFRKNENSITKVIKDDIFQLY 139
V G D++L V+ K P+P K ++N ++ +DS KN+ S T+ +DD F LY
Sbjct: 1581 VYQGIDLHLLKVSIKKTPEPSISKDAQVENKSLHMKATDSPGKNKTSSTEKSRDDGFFLY 1640
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 28 LHADGSDEWTLRVSPAQPRDSGAYECQVSTEPKISLSFRLTV 69
L D DE VS ++EC ST ++SL FR+ +
Sbjct: 386 LSLDDDDEEEEEVSDIAVLSGQSFECLQSTLKRVSLQFRMEI 427
>06_02_0280 -
13708651-13708839,13708895-13709164,13709889-13710476,
13710511-13710686,13710897-13711029,13711193-13711462,
13711521-13711889
Length = 664
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 124 ENSITKVIKDDIFQLYLLVPRRAGGKLRTARGHQRRNRTADENK-STPHSKGFAARFREL 182
E S K+I+ + QL LVP G++ N A + PH + R+
Sbjct: 213 ELSFNKIIETQLAQLAALVPTNESGRVPGQPNSSIENVKAITTRGENPHQRAIVGRYESA 272
Query: 183 HLCT 186
++ T
Sbjct: 273 NIRT 276
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 6 KRDLHILTVGVHTYSSDARFAALHADGSDEWTLRVSPAQPRDSGAYECQVSTEPKISLSF 65
+R+ + +G T ++ + H EW L+ P PR + P ++
Sbjct: 339 EREHRVWVIGTATCATYLKCQVYHPSLESEWDLQAVPITPRPPPPPPSSLGLSPSVN-GV 397
Query: 66 RLTVVVSKAEILS 78
++ S E+LS
Sbjct: 398 NRGILSSSVEVLS 410
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,895,858
Number of Sequences: 37544
Number of extensions: 232479
Number of successful extensions: 477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 8
length of query: 187
length of database: 14,793,348
effective HSP length: 78
effective length of query: 109
effective length of database: 11,864,916
effective search space: 1293275844
effective search space used: 1293275844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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