GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001545-TA|BGIBMGA001545-PA|IPR007110|Immunoglobulin-like
         (187 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    28   3.4  
At3g17680.1 68416.m02257 expressed protein similar to GB:AAD4975...    28   4.5  
At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive eff...    27   7.8  

>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 21  SDARFAALHADGS-DEWTLRVSPAQPRDSGAYECQVSTEPKISLSFRLTVVVSKAEILSG 79
           +DA FA+  +DG  + W +   P+QP +    EC+V     I +  +  V +S AE+   
Sbjct: 133 TDAMFASASSDGVVNVWDVSF-PSQPSE----ECKVVCLDSICVDTKAIVTLSLAELPQN 187

Query: 80  PELFVRA 86
           P  F  A
Sbjct: 188 PGRFALA 194


>At3g17680.1 68416.m02257 expressed protein similar to GB:AAD49756
           from [Arabidopsis thaliana]
          Length = 313

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 52  ECQVSTEPKISLSFRLTVVVSKAEILSGPELFVRAGSDINLTCVAKHAPDPPRGKIRILQ 111
           E +V+ E   +L ++LT ++ +   L+   LF++  +     CV K   D    K+ ILQ
Sbjct: 176 EKEVAVEENANLGYKLTSLLEENRELATEALFMKNEAVGLARCVLKMRDDHFH-KVCILQ 234

Query: 112 NVIEFSDSFRKNENSITKV 130
           N I    + R +E    KV
Sbjct: 235 NRIYSLQASRNSEPVSDKV 253


>At5g52090.1 68418.m06466 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 676

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 109 ILQNVIEFSDSFRKNENSITKVIKDDIFQLYLLVPR 144
           ++ N+  F +  +KN NS+++ +K  I  LY  +P+
Sbjct: 227 VVVNIPTFGEFVQKNFNSLSEEVKTCIVDLYTHLPK 262


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,570,830
Number of Sequences: 28952
Number of extensions: 177144
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 3
length of query: 187
length of database: 12,070,560
effective HSP length: 77
effective length of query: 110
effective length of database: 9,841,256
effective search space: 1082538160
effective search space used: 1082538160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)