GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001544-TA|BGIBMGA001544-PA|undefined
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.30 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    29   0.52 
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    28   0.90 
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    28   1.2  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   1.6  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    27   2.1  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    26   3.6  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   4.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   6.4  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   6.4  
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.4  

>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 142

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 40 IYSCVLFFTYGFMTVLEIMAATMGDFPDDEKRDSVTFASSHTLIM 84
          I S +LFF   F   + ++ AT+G+F DD+     T  S   L++
Sbjct: 6  IKSFLLFFFLPFFLSMPMIFATLGEFTDDQTHHYSTLPSCDLLLI 50


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 14/57 (24%), Positives = 33/57 (57%)

Query: 67  DDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLNRKMMMICEAHEEQTLMDEMYRI 123
           +D++  +V      T+I + FI++ KN +L+   ++K   + E    ++L+D+ Y++
Sbjct: 264 NDKETLTVFTTKPETIIDVSFIALSKNHKLVLLESQKDPSLAEHLRNESLLDKGYQL 320


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 16   FLVGSGNFWYQKTESRNDKTLLYKIYSCVLFFTYG 50
            FL+ +  FWY  T  R  +  + + Y+C +   +G
Sbjct: 1033 FLINALTFWYGSTLMRKGEYNIVQFYTCFIAIVFG 1067


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 52  MTVLEIMAATMGDFPDDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLNRKMMMICEAH 111
           M+VLE  A           R ++ FA S  ++    ++I+ NK+ L  +N  ++M+    
Sbjct: 67  MSVLEANAKEPDSENAPVSRLTIFFAVSSQIVFAILVTIL-NKQALNIINAPLLMLSFQM 125

Query: 112 EEQTLMDEMY-RIVKINVVAYCVAVYGSVTFFVFEGLRKFYDVDTYTMAYLIMYKYK 167
              +LM +MY R   ++     +A    +  F+F  +       TY +A++ +  Y+
Sbjct: 126 AFTSLMVKMYWRFSSVHFQTLRLASAIQLKKFIFVKILGIVS-KTYCLAFVPVSFYQ 181


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 105 MMICEAHEEQTLMDEMYRIVKINVVAYCVAVYGSVTFFVFEGLRKFYDVD-TYTMAYLIM 163
           M+ CE    Q L+D +  + K  ++ YC+    +V+  + EG+    D++  +   +L +
Sbjct: 473 MLHCEKQHIQLLLDSVLDLSKEQILEYCLE---TVSSHLIEGILDLSDLNPVFLKKFLNI 529

Query: 164 YKYKFITL 171
               F TL
Sbjct: 530 LSGSFATL 537


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 147 LRKFYDVDTYTMAYLIMYKYKFITLRHYFKRLRENVDELVAAGK 190
           LR F DV+TY + +L+   Y +  L H FK    N++ L   G+
Sbjct: 196 LRLFEDVETYLLNFLLKPAY-YRFLNHKFK---HNLNPLTCTGR 235


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 181 NVDELVAAGKARLAAEKLAQGLVEG--IKMHNELL 213
           N D +   GKAR+ A+ ++  L+ G  I+  NEL+
Sbjct: 146 NADTVFVRGKARVVADNISLPLISGSEIEYTNELI 180


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 52  MTVLEIMAATMGD---FPDDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLNRKMMMIC 108
           M+ LE   A M D     DD +R ++     + L+ +K + +IK +E L    R  +M C
Sbjct: 165 MSDLESYPAVMRDVAELKDDNERLNLDTIKRNALVELKKLRLIKQQESL----RHQVMHC 220

Query: 109 EAH 111
           + H
Sbjct: 221 QPH 223


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 3   KNHYILKTYCDKIFLVGSGNFWYQKTESRNDKTLLYKIYSCVLF 46
           + H ++K      FL  S NF+    +   ++ LL     C++F
Sbjct: 315 QTHEVIKLLARLFFLPSSANFYLLLIQFNTERILLPHEQPCIIF 358


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/70 (21%), Positives = 33/70 (47%)

Query: 37  LYKIYSCVLFFTYGFMTVLEIMAATMGDFPDDEKRDSVTFASSHTLIMIKFISIIKNKEL 96
           L+K Y   LF      + + I+A  + DF + +K +      S++     FI   K+++L
Sbjct: 192 LFKFYPIDLFVLLLSQSFICIIAFGVSDFINFQKEERNFRGKSNSAFYNDFIQSFKSEDL 251

Query: 97  LKTLNRKMMM 106
           ++     +++
Sbjct: 252 IQEYESSLLL 261


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 63  GDFPDDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLN 101
           G F  DE  D+  F  S  +  I FISI+  K++LKT N
Sbjct: 114 GRFVPDEA-DNFQFGDSKIVTKIAFISIL--KKILKTPN 149


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.140    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,822
Number of Sequences: 5004
Number of extensions: 36656
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 12
length of query: 214
length of database: 2,362,478
effective HSP length: 70
effective length of query: 144
effective length of database: 2,012,198
effective search space: 289756512
effective search space used: 289756512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)