GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001544-TA|BGIBMGA001544-PA|undefined
         (214 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              34   0.077
SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.1  
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 52   MTVLEIMAATMGD--FPDDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLNRKMMMICE 109
            MT++ +M +  G+  FP  ++ +S T  S +  I + F S  + ++++KT  R  +    
Sbjct: 1687 MTMMTVMLSITGELSFPTAKECESTTTPSRYVTIPVAFESAPRYRQVMKTALR--VQAFT 1744

Query: 110  AHEEQTLMDEMYRIVKINVVAYCV 133
             +   T++  + + VK+  VAY V
Sbjct: 1745 RYVSHTVIGSLDQTVKVATVAYVV 1768


>SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1006

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 102 RKMMMICEAHEEQTLMDEMYRIVKINVVAYCV--AVYGSVTFFVFEGLRKFYDVDTYTMA 159
           R   + C      TL+ ++ R + +  V +CV   + G   F     + KF  +    + 
Sbjct: 701 RLCALFCSTRRYVTLVSKLIRCLILQYVTFCVTLVMIGCAVFLQLSTVLKFSLLTVMAIV 760

Query: 160 YLIMYKY--KFITLRHYF 175
           Y+++ +Y  K   LRH F
Sbjct: 761 YILLVQYVAKNSFLRHDF 778


>SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 69  EKRDSVTFASSHTLIMIK-FISIIKNKELLKTLNRKMMMICEAHEEQTLMDEMYRIVKIN 127
           E +D  TF   + L ++K  + +  N + ++ L R + +  + H +  L  E+YR+V + 
Sbjct: 259 EVQDKATFILMNCLALLKKHVMLGLNGKAVRALFRVVFLYYQHHADTALAQEIYRLVLLV 318

Query: 128 VVAY 131
           V  +
Sbjct: 319 VTKH 322


>SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 143 VFEGLRKFYDVDTYTMAYLIMYKYKFITLRHYFK 176
           +F G + +YDV TY    L++  Y+   L  Y++
Sbjct: 56  IFRGCKGYYDVVTYYRLTLLVMHYRITLLVTYYR 89


>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 53   TVLEIMAATMGDFPDDEKRDS-----VTFASSHTLIMIKFISIIKNKELLKTLNRKMMMI 107
            T+  +M  T+GDF  DE + +       F  S+ L+++  +  +    +++T N     +
Sbjct: 1219 TMASLMGLTLGDFDFDELKQANRLFGPMFFFSYVLVVLFILMNVFLSIIVETFNEVNSDV 1278

Query: 108  CEAHEEQTLMDEMYRIVKINV 128
             +   +  +M  M   VK N+
Sbjct: 1279 SKQANDHEIMSFMMHTVKQNI 1299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.140    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,450,566
Number of Sequences: 59808
Number of extensions: 231453
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 5
length of query: 214
length of database: 16,821,457
effective HSP length: 79
effective length of query: 135
effective length of database: 12,096,625
effective search space: 1633044375
effective search space used: 1633044375
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)