GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001544-TA|BGIBMGA001544-PA|undefined
         (214 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15782-1|AAA61417.1|  717|Homo sapiens cleavage stimulation fact...    34   0.32 
BC108319-1|AAI08320.1|  717|Homo sapiens cleavage stimulation fa...    34   0.32 
AL121926-1|CAC48252.1|  708|Homo sapiens dJ85M6.1 (cleavage stim...    34   0.32 
X79440-1|CAA55956.1|  604|Homo sapiens malate dehydrogenase (oxa...    30   7.0  
BC022472-1|AAH22472.1|  604|Homo sapiens malic enzyme 3, NADP(+)...    30   7.0  
AB065798-1|BAC06017.1|  313|Homo sapiens seven transmembrane hel...    29   9.2  

>U15782-1|AAA61417.1|  717|Homo sapiens cleavage stimulation factor
           77kDa subunit protein.
          Length = 717

 Score = 34.3 bits (75), Expect = 0.32
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 81  TLIMIKFISIIKNKELLKTLNRKMMMICEAHEEQTLMDEMYRIVKINVVAYCVAVYGSVT 140
           TL+ I+++   +  E +K+     M+  +A E+      +Y  V   ++ Y  +   SV 
Sbjct: 375 TLVYIQYMKFARRAEGIKS---GRMIFKKAREDTRTRHHVY--VTAALMEYYCSKDKSVA 429

Query: 141 FFVFE-GLRKFYDVDTYTMAYL 161
           F +FE GL+K+ D+  Y +AY+
Sbjct: 430 FKIFELGLKKYGDIPEYVLAYI 451


>BC108319-1|AAI08320.1|  717|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 3, 77kDa protein.
          Length = 717

 Score = 34.3 bits (75), Expect = 0.32
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 81  TLIMIKFISIIKNKELLKTLNRKMMMICEAHEEQTLMDEMYRIVKINVVAYCVAVYGSVT 140
           TL+ I+++   +  E +K+     M+  +A E+      +Y  V   ++ Y  +   SV 
Sbjct: 375 TLVYIQYMKFARRAEGIKS---GRMIFKKAREDTRTRHHVY--VTAALMEYYCSKDKSVA 429

Query: 141 FFVFE-GLRKFYDVDTYTMAYL 161
           F +FE GL+K+ D+  Y +AY+
Sbjct: 430 FKIFELGLKKYGDIPEYVLAYI 451


>AL121926-1|CAC48252.1|  708|Homo sapiens dJ85M6.1 (cleavage
           stimulation factor, 3' pre-RNA, subunit 3, 77kD)
           protein.
          Length = 708

 Score = 34.3 bits (75), Expect = 0.32
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 81  TLIMIKFISIIKNKELLKTLNRKMMMICEAHEEQTLMDEMYRIVKINVVAYCVAVYGSVT 140
           TL+ I+++   +  E +K+     M+  +A E+      +Y  V   ++ Y  +   SV 
Sbjct: 366 TLVYIQYMKFARRAEGIKS---GRMIFKKAREDTRTRHHVY--VTAALMEYYCSKDKSVA 420

Query: 141 FFVFE-GLRKFYDVDTYTMAYL 161
           F +FE GL+K+ D+  Y +AY+
Sbjct: 421 FKIFELGLKKYGDIPEYVLAYI 442


>X79440-1|CAA55956.1|  604|Homo sapiens malate dehydrogenase
           (oxaloacetate decarboxylating) (NADP+) protein.
          Length = 604

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 100 LNRKMMMICEAHEEQTLMDEMYRIVKINVVAYCVAVYGSVTFFVFEGLRKFYD 152
           LN +  M  + H E   ++E+ R+VK   +    A+ G+ T  +   +  F++
Sbjct: 382 LNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMASFHE 434


>BC022472-1|AAH22472.1|  604|Homo sapiens malic enzyme 3,
           NADP(+)-dependent, mitochondrial protein.
          Length = 604

 Score = 29.9 bits (64), Expect = 7.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 100 LNRKMMMICEAHEEQTLMDEMYRIVKINVVAYCVAVYGSVTFFVFEGLRKFYD 152
           LN +  M  + H E   ++E+ R+VK   +    A+ G+ T  +   +  F++
Sbjct: 382 LNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMASFHE 434


>AB065798-1|BAC06017.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 72  DSVTFASSHTLIMIKFISIIKNKELLKTLNRKMMMIC 108
           D +  A S+TLI+   + I   KE LK LN  +  IC
Sbjct: 211 DFILIAVSYTLILKTVLGIASKKEQLKALNTCVSHIC 247


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.327    0.140    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,496,840
Number of Sequences: 224733
Number of extensions: 1043704
Number of successful extensions: 3636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3633
Number of HSP's gapped (non-prelim): 6
length of query: 214
length of database: 73,234,838
effective HSP length: 87
effective length of query: 127
effective length of database: 53,683,067
effective search space: 6817749509
effective search space used: 6817749509
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 63 (29.5 bits)