GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001544-TA|BGIBMGA001544-PA|undefined
         (214 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73530-1|AAB32328.1|  536|Drosophila melanogaster phr protein.         29   6.4  
D26021-1|BAA05042.1|  640|Drosophila melanogaster photolyase pro...    29   6.4  
AY094847-1|AAM11200.1|  557|Drosophila melanogaster RE06505p pro...    29   6.4  
AY084133-1|AAL89871.1|  555|Drosophila melanogaster RE21178p pro...    29   6.4  
AE014297-1000|AAF54426.1|  557|Drosophila melanogaster CG9444-PA...    29   6.4  
AE013599-518|AAG22302.2|  330|Drosophila melanogaster CG18853-PA...    29   6.4  
AE013599-515|AAM68868.1|  535|Drosophila melanogaster CG11205-PB...    29   6.4  
AE013599-514|AAF59185.1|  555|Drosophila melanogaster CG11205-PA...    29   6.4  
AY128505-1|AAM75098.1| 1533|Drosophila melanogaster SD07147p pro...    28   8.4  
AJ249606-1|CAB56505.1| 1287|Drosophila melanogaster NPC1 protein...    28   8.4  
AE014297-1403|AAF54717.4| 1975|Drosophila melanogaster CG6977-PA...    28   8.4  
AE014135-150|AAN06593.1| 3183|Drosophila melanogaster CG2999-PB,...    28   8.4  

>S73530-1|AAB32328.1|  536|Drosophila melanogaster phr protein.
          Length = 536

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 134 AVYGSVTFFVFEGLRKFYDVDTYTMAY 160
           A++G V +  ++G R+ +DV+ + M Y
Sbjct: 502 AIFGKVRYMNYQGCRRKFDVNAFVMRY 528


>D26021-1|BAA05042.1|  640|Drosophila melanogaster photolyase
           protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 134 AVYGSVTFFVFEGLRKFYDVDTYTMAY 160
           A++G V +  ++G R+ +DV+ + M Y
Sbjct: 606 AIFGKVRYMNYQGCRRKFDVNAFVMRY 632


>AY094847-1|AAM11200.1|  557|Drosophila melanogaster RE06505p
           protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 15  IFLVGSGNFWYQKTESRNDKTLLYKIYSCV 44
           IFLVG    W+ K+E  +D  +L+K   C+
Sbjct: 259 IFLVGK---WFYKSEKLSDDNILFKFCGCI 285


>AY084133-1|AAL89871.1|  555|Drosophila melanogaster RE21178p
           protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 134 AVYGSVTFFVFEGLRKFYDVDTYTMAY 160
           A++G V +  ++G R+ +DV+ + M Y
Sbjct: 521 AIFGKVRYMNYQGCRRKFDVNAFVMRY 547


>AE014297-1000|AAF54426.1|  557|Drosophila melanogaster CG9444-PA
           protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 15  IFLVGSGNFWYQKTESRNDKTLLYKIYSCV 44
           IFLVG    W+ K+E  +D  +L+K   C+
Sbjct: 259 IFLVGK---WFYKSEKLSDDNILFKFCGCI 285


>AE013599-518|AAG22302.2|  330|Drosophila melanogaster CG18853-PA
           protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 134 AVYGSVTFFVFEGLRKFYDVDTYTMAY 160
           A++G V +  ++G R+ +DV+ + M Y
Sbjct: 296 AIFGKVRYMNYQGCRRKFDVNAFVMRY 322


>AE013599-515|AAM68868.1|  535|Drosophila melanogaster CG11205-PB,
           isoform B protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 134 AVYGSVTFFVFEGLRKFYDVDTYTMAY 160
           A++G V +  ++G R+ +DV+ + M Y
Sbjct: 501 AIFGKVRYMNYQGCRRKFDVNAFVMRY 527


>AE013599-514|AAF59185.1|  555|Drosophila melanogaster CG11205-PA,
           isoform A protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 134 AVYGSVTFFVFEGLRKFYDVDTYTMAY 160
           A++G V +  ++G R+ +DV+ + M Y
Sbjct: 521 AIFGKVRYMNYQGCRRKFDVNAFVMRY 547


>AY128505-1|AAM75098.1| 1533|Drosophila melanogaster SD07147p
           protein.
          Length = 1533

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 133 VAVYGSVTFFVFEGLRKFYDVDTYTMAYLIMYKYKFITLRHYFKRLRENVDELVAAGKAR 192
           V V+G +T+ +     K++ +D YT    +M     I  R   K L  +V   VA  KA 
Sbjct: 690 VGVFGEITYTLIGENNKYFSIDAYTGN--VMVANSSILDREQIKELTLSV---VAQDKAP 744

Query: 193 LAAEKLAQGLV 203
            A +K A   +
Sbjct: 745 AAVQKSATATI 755


>AJ249606-1|CAB56505.1| 1287|Drosophila melanogaster NPC1 protein
           protein.
          Length = 1287

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 12/134 (8%)

Query: 59  AATMGDF--PDDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLNRKMMMICEAHEEQTL 116
           A  +G F  P D+   S  F  ++ +I+     ++KN      L   +        E+  
Sbjct: 535 AIALGGFLPPGDQLTGSTKFELANAIILT---FLVKNHHNKTDLENALTW------EKKF 585

Query: 117 MDEMYRIVKINVVAYCVAVYGSVTFFVFEGLRKFY-DVDTYTMAYLIMYKYKFITLRHYF 175
           ++ M    K N+  Y    + S      E  R+   DV T  ++YLIM+ Y  I+L H  
Sbjct: 586 VEFMTNYTKNNMSQYMDIAFTSERSIEDELTRESQSDVLTILVSYLIMFMYIAISLGHVK 645

Query: 176 KRLRENVDELVAAG 189
           +  R  +D  +  G
Sbjct: 646 EFKRVFIDSKITLG 659


>AE014297-1403|AAF54717.4| 1975|Drosophila melanogaster CG6977-PA
            protein.
          Length = 1975

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 133  VAVYGSVTFFVFEGLRKFYDVDTYTMAYLIMYKYKFITLRHYFKRLRENVDELVAAGKAR 192
            V V+G +T+ +     K++ +D YT    +M     I  R   K L  +V   VA  KA 
Sbjct: 1132 VGVFGEITYTLIGENNKYFSIDAYTGN--VMVANSSILDREQIKELTLSV---VAQDKAP 1186

Query: 193  LAAEKLAQGLV 203
             A +K A   +
Sbjct: 1187 AAVQKSATATI 1197


>AE014135-150|AAN06593.1| 3183|Drosophila melanogaster CG2999-PB,
            isoform B protein.
          Length = 3183

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 61   TMGDFPDDEKRDSVTFASSH----TLIMIKFISIIKNKELLKTLNRKMMMICEAHEEQTL 116
            T   FP  E  +  +F  SH    T    +F+ + +N   +  L+ K + IC A+E +++
Sbjct: 931  TYHSFPLAENSNFHSFPLSHEQAQTTNQTEFVILEENLNYIYELS-KNLPICSAYENKSI 989

Query: 117  MDEMYRIVKINVV 129
             D  Y I   N +
Sbjct: 990  FDMKYEICDSNEI 1002


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.327    0.140    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,208,432
Number of Sequences: 52641
Number of extensions: 342841
Number of successful extensions: 1090
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 12
length of query: 214
length of database: 24,830,863
effective HSP length: 82
effective length of query: 132
effective length of database: 20,514,301
effective search space: 2707887732
effective search space used: 2707887732
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)