GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001544-TA|BGIBMGA001544-PA|undefined
         (214 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine re...    33   0.16 
Z81510-6|CAB04161.3|  327|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine
           receptor, class sx protein8 protein.
          Length = 296

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 7   ILKTYCDKIFLVGSGNFWYQ-KTESRNDKTLLYKIYSCVLFFTYGFMTVLEIMAATMGDF 65
           I  T+   +F++    FW + KT + + KT+ +  +S ++F    +++V  I A  +  +
Sbjct: 171 ISNTFSLVVFVILISIFWKKGKTSNESSKTMRHLKFSAIIFIISNYLSVFVINAFILYGY 230

Query: 66  PDDEKRDSVTFASSHTLIMI--KFISII-KNKELLKTLNRKMMMICEAHEEQTLM 117
             DE    +   S  ++I     F +II ++K+  K   R   M C A+     M
Sbjct: 231 AGDELNGVIGNISIFSMISFTHTFYTIIWRSKDYRK---RFFRMYCTAYGPSVTM 282


>Z81510-6|CAB04161.3|  327|Caenorhabditis elegans Hypothetical
           protein F21D9.2 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 25  YQKTESRNDKTLLYKIYSCVLFFTYGFMTVLEI 57
           Y +T+  +D+ L Y I + +L+F  G++TV E+
Sbjct: 192 YPETKFDDDEKLYYNIGAILLYFIVGYLTVAEL 224


>Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical
           protein K03D3.12 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 66  PDDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLNRKMMM-ICEAHEEQTLMDEMYRIV 124
           PD  K D ++     +LI+I F+       L   L       IC+ +EEQ   D++Y +V
Sbjct: 4   PDSTKADDLSIKIPDSLIVI-FVLFFSMLMLCYALMLPFFKYICKINEEQDSQDKLYTVV 62

Query: 125 K 125
           K
Sbjct: 63  K 63


>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/67 (22%), Positives = 32/67 (47%)

Query: 42  SCVLFFTYGFMTVLEIMAATMGDFPDDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLN 101
           S VL F +    +  +    +   P   +R S++  SS ++  +   +    K+L+++LN
Sbjct: 239 SYVLHFLHNTSIMAAVSPFRLLQLPQRAQRISLSHMSSVSVFSLSLCATKNTKDLVRSLN 298

Query: 102 RKMMMIC 108
            K + +C
Sbjct: 299 LKCIRLC 305


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 76   FASSHTLIMIKFISIIKNKELLKTLNRKMMMICEAHEEQTLMDEMYRIVKINVVAYCVAV 135
            F +  +   I  +  I+  ELL  ++ K++  C+  E   ++   + IVK  + +  +A+
Sbjct: 2183 FKTDFSWCTIFHVPTIEKSELLSKVS-KIISDCKVDEAAQIIVSTFFIVKKYLQSIGIAL 2241

Query: 136  YGSVTFFVFE 145
            YG+V   +FE
Sbjct: 2242 YGTVFSQLFE 2251


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.140    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,017,556
Number of Sequences: 27539
Number of extensions: 198862
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 5
length of query: 214
length of database: 12,573,161
effective HSP length: 78
effective length of query: 136
effective length of database: 10,425,119
effective search space: 1417816184
effective search space used: 1417816184
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)