GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001544-TA|BGIBMGA001544-PA|undefined
         (214 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26390.1 68414.m03219 FAD-binding domain-containing protein s...    29   1.8  
At5g58430.1 68418.m07317 exocyst subunit EXO70 family protein le...    29   2.4  
At5g15680.1 68418.m01834 expressed protein                             29   2.4  
At5g13210.1 68418.m01516 expressed protein                             29   2.4  
At3g18430.1 68416.m02343 calcium-binding EF hand family protein ...    29   2.4  
At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containi...    29   2.4  
At2g21560.1 68415.m02566 expressed protein contains weak similar...    28   4.2  
At4g01450.3 68417.m00186 nodulin MtN21 family protein similar to...    28   5.5  
At4g01450.2 68417.m00188 nodulin MtN21 family protein similar to...    28   5.5  
At4g01450.1 68417.m00187 nodulin MtN21 family protein similar to...    28   5.5  
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT...    27   7.3  
At2g32130.1 68415.m03927 expressed protein contains Pfam domain,...    27   7.3  
At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containi...    27   9.6  

>At1g26390.1 68414.m03219 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 530

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 66  PDDEKRDSVTFASSHTLIMIKFISIIKNKELLKTLNRKMMMICEA 110
           P++   D+++FA + T  +  ++S  KNK       RK++ I  A
Sbjct: 39  PENPITDAISFADNTTTFLSSYVSYTKNKRFSTPNYRKLLAIVAA 83


>At5g58430.1 68418.m07317 exocyst subunit EXO70 family protein
           leucine zipper-containing protein, Lycopersicon
           esculentum, PIR:S21495; contains Pfam domain PF03081:
           Exo70 exocyst complex subunit; similar to rexo70
           (GI:2827160) {Rattus norvegicus}
          Length = 624

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 94  KELLKTLNRKMMMICEAHEEQTLMDEMYR-IVKINVVAYCVAVYGS 138
           KE LK  N +   IC+ H    + DE  +  +KI++    V  YGS
Sbjct: 537 KEKLKQFNIQFDEICKVHSTWVVFDEQLKEELKISLARLLVPAYGS 582


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 66  PDDEKRDSVTFASSHTLIMIKFISIIKNK--ELLKTLNRKMMMICEAHEEQTLMDEMYRI 123
           P D +RDS    S  TL  I F S+ KNK    L  L +    +C    ++   + M+R+
Sbjct: 705 PFDLRRDSDAIPSDVTLQSIIFESLDKNKWGRCLSELVKYAAELCPRSVQEAKSEIMHRL 764

Query: 124 VKINVVAY 131
             I  V +
Sbjct: 765 AHITPVEF 772


>At5g13210.1 68418.m01516 expressed protein
          Length = 673

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 143 VFEGLRKFYDVDTYT-MAYLIMYKYKFITLRHYFKRLRENVDELVAAGKARLAA 195
           V+ G R  +D+  Y  +A + M  YK I L+H  +R ++ +D+   AGK ++AA
Sbjct: 362 VYMGARN-WDILPYNRVASVAMKSYKEIFLKHDAERFQQYLDD-AKAGKTKVAA 413


>At3g18430.1 68416.m02343 calcium-binding EF hand family protein
           similar to Calcineurin B subunit (Protein phosphatase 2B
           regulatory subunit) (Calcineurin regulatory subunit)
           SP:P42322 from [Naegleria gruberi]; contains Pfam
           profile PF00036: EF hand
          Length = 175

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 27  KTESRNDKTLLYKIYSCVLFFTYGFMTVLEIMAATMGDFPDDEKRDSV 74
           K   R    L++K+Y         F  ++E++    G F  DE+R+ V
Sbjct: 89  KASLRQKVQLIFKVYDSDCNGKVSFKDIMEVLRDLSGSFMSDEQREQV 136


>At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 964

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 174 YFKRLRENVDELVAAGKARLAAEKLAQGLV 203
           Y K +   V++LVAAG+ R+A + L Q LV
Sbjct: 934 YGKHIVARVEKLVAAGERRMALQSLPQPLV 963


>At2g21560.1 68415.m02566 expressed protein contains weak similarity
           to reticulocyte-binding protein 2 homolog A [Plasmodium
           falciparum] gi|9754767|gb|AAF98066
          Length = 274

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 98  KTLNRKMMMICEAHEEQTLMDEMYRIVKINVVAYCVA 134
           K   RKM ++ +    Q L+D  YR+++I +V   +A
Sbjct: 8   KAKPRKMKVVVKKSRAQVLLDLFYRVIEITLVIITLA 44


>At4g01450.3 68417.m00186 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 245

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 4   NHYILKTY---CDKIFLVGSGNFWYQKTESRNDKTLLYKIYSCVLF----FTYGFMTVLE 56
           NH ++ TY      +FL+    FW +KT  +   ++  +++   LF      Y ++  L 
Sbjct: 37  NHMVIATYRLGISTLFLLPVAYFWERKTRPKLTLSISCQLFVSALFGASLMQYFYLLGLS 96

Query: 57  IMAATMG 63
             +AT+G
Sbjct: 97  YTSATLG 103


>At4g01450.2 68417.m00188 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 361

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 4   NHYILKTY---CDKIFLVGSGNFWYQKTESRNDKTLLYKIYSCVLF----FTYGFMTVLE 56
           NH ++ TY      +FL+    FW +KT  +   ++  +++   LF      Y ++  L 
Sbjct: 37  NHMVIATYRLGISTLFLLPVAYFWERKTRPKLTLSISCQLFVSALFGASLMQYFYLLGLS 96

Query: 57  IMAATMG 63
             +AT+G
Sbjct: 97  YTSATLG 103


>At4g01450.1 68417.m00187 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 343

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 4   NHYILKTY---CDKIFLVGSGNFWYQKTESRNDKTLLYKIYSCVLF----FTYGFMTVLE 56
           NH ++ TY      +FL+    FW +KT  +   ++  +++   LF      Y ++  L 
Sbjct: 37  NHMVIATYRLGISTLFLLPVAYFWERKTRPKLTLSISCQLFVSALFGASLMQYFYLLGLS 96

Query: 57  IMAATMG 63
             +AT+G
Sbjct: 97  YTSATLG 103


>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
           identical to potassium channel [Arabidopsis thaliana]
           gi|1100898|gb|AAA97865; Note: also identical to AKT3
           [Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
           a truncated version of AKT2, PMID:10852932; member of
           the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
           channel family, PMID:11500563; identical to cDNA
           inward-rectifying K+ channel (AKT3) GI:1172219
          Length = 802

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 111 HEEQTLMDEMYRIVKINV-VAYCVAVYGSVTFFVFEGLRKFYDVDTYTMAYLIMYKYKFI 169
           H+ +T  D +    + ++ + Y  A+Y S+T     G    +  +T  M ++ +Y    +
Sbjct: 243 HQGKTWTDAIPNFTETSLSIRYIAAIYWSITTMTTVGYGDLHASNTIEMVFITVYMLFNL 302

Query: 170 TLRHYFKRLRENVDELVAAGKAR 192
            L  Y   L  N+  LV  G  R
Sbjct: 303 GLTAY---LIGNMTNLVVEGTRR 322


>At2g32130.1 68415.m03927 expressed protein contains Pfam domain,
           PF04859: Plant protein of unknown function (DUF641)
          Length = 157

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 18  VGSGNFWYQKTESRNDKTLLYKIYSCVLFFTYGFMTVLEIMAATMGDFPDDEKRDSVTFA 77
           VG G F  Q     ++      ++  V+   +   T ++   A +         D++  A
Sbjct: 10  VGVGTFKSQNPNFDDEDDDGDCLFKAVVAKIFASTTSIKAAYAELQRAQSPYDSDAIQAA 69

Query: 78  SSHTLIMIKFISIIKNKELLKTLN---RKMMMICEAHEEQTLM 117
            +  +  +K +S +K   + K LN   +  +M+ E HE+Q+LM
Sbjct: 70  DTVVVNELKTLSELKRSFMRKELNLSPKVAIMLAEIHEQQSLM 112


>At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 972

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 174 YFKRLRENVDELVAAGKARLAAEKLAQ 200
           Y K +   V++LVAAG+ R+A + L Q
Sbjct: 942 YGKHIVARVEKLVAAGERRMALQSLTQ 968


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.140    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,657,317
Number of Sequences: 28952
Number of extensions: 177672
Number of successful extensions: 528
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 13
length of query: 214
length of database: 12,070,560
effective HSP length: 78
effective length of query: 136
effective length of database: 9,812,304
effective search space: 1334473344
effective search space used: 1334473344
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)