Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001543-TA|BGIBMGA001543-PA|undefined
         (110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    25   3.6  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.6  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   3.6  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    23   8.3  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    23   8.3  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    23   8.3  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    23   8.3  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 5   GENLEEASIMRRQFRK-----MRLGTALYFISVYLSLVAYGVESARR 46
           GENL  A   + QF         L TAL   S++L++VA  VE A+R
Sbjct: 227 GENLWLAGSQQFQFGAEVQVVSLLYTALTMSSIFLAIVAPKVEGAKR 273


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 22 RLGTALYFISVYLSLVAYGVES-ARRTIVEGERFNTLT 58
          R+GT L+F++  L+  A  V S  R T  +  + NT+T
Sbjct: 4  RVGTTLFFLANALAAYAVSVTSPTRDTTWQSGQVNTVT 41


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 26  ALYFISVYLSLVAYGVESARRTI 48
           ALY+IS Y+S + Y  E A  T+
Sbjct: 462 ALYWISRYISTMKYNPELAAETL 484


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 20  KMRLGTALYFISVYLSL-VAYGVESARRTIVEGERFNTL 57
           + R+GT LY I  YL +  ++G     R    G+ F  L
Sbjct: 758 EQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQL 796


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 30  ISVYLSLVAYGVESARRTIVEGERFNTLTAMTIL 63
           ISVY+SL A      +R I E ER     A++ L
Sbjct: 227 ISVYISLCALACWDHKRLIQELERNEEFNALSDL 260


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 20  KMRLGTALYFISVYLSL-VAYGVESARRTIVEGERFNTL 57
           + R+GT LY I  YL +  ++G     R    G+ F  L
Sbjct: 758 EQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQL 796


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 13  IMRRQFRKMRLGTALYFISVYLSLVAY 39
           + R + R+ R+   ++F++ Y+S + Y
Sbjct: 86  LSRPETRRKRMACQVFFLNYYISTIEY 112


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,812
Number of Sequences: 5004
Number of extensions: 7807
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 7
length of query: 110
length of database: 2,362,478
effective HSP length: 64
effective length of query: 46
effective length of database: 2,042,222
effective search space: 93942212
effective search space used: 93942212
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 48 (23.4 bits)