GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001543-TA|BGIBMGA001543-PA|undefined
         (110 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0515 + 16698589-16701066                                         26   7.6  

>04_03_0515 + 16698589-16701066
          Length = 825

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 18  FRKMRLGTALYFISVYLSLVAYGVESARRTIVEGERFNTL 57
           FR M L   +   SV  +++ +G+  ARRTIV  E F+ +
Sbjct: 598 FRDM-LHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEM 636


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.138    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,378
Number of Sequences: 37544
Number of extensions: 50177
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 1
length of query: 110
length of database: 14,793,348
effective HSP length: 72
effective length of query: 38
effective length of database: 12,090,180
effective search space: 459426840
effective search space used: 459426840
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)