Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001542-TA|BGIBMGA001542-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (470 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.5  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   4.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.1  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   8.1  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   8.1  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 392 SNVLTSGVMGGNQMNSGPLSNISGTSRPLGVSVPNQ 427
           S++L SG+ GG  MN   +++ S     +G  + N+
Sbjct: 51  SSMLNSGMPGGMAMNGNGMTSSSMGYTTIGSPISNR 86


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 426 NQGYGRDTGVQQSTRDKPSDMVIITNEKVVQVVLLWGF 463
           N+G      V++S   K +  V +T+EK+V   LL+ F
Sbjct: 241 NEGGEGFATVEESEIGKNTKQVELTDEKIVAQALLFFF 278


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 393 NVLTSGVMGGNQMNSGPLSNISG 415
           N LT+ V      +SGP S+I G
Sbjct: 71  NGLTNNVPSNGLSSSGPFSSIGG 93


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 446 MVIITNEKVVQVVLLWGFVCNRL 468
           +++IT + +VQ++    F+ N L
Sbjct: 243 LILITGKSIVQLLTCLNFITNNL 265


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 446 MVIITNEKVVQVVLLWGFVCNRL 468
           +++IT + +VQ++    F+ N L
Sbjct: 243 LILITGKSIVQLLTCLNFITNNL 265


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,402
Number of Sequences: 317
Number of extensions: 3292
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 470
length of database: 114,650
effective HSP length: 59
effective length of query: 411
effective length of database: 95,947
effective search space: 39434217
effective search space used: 39434217
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)