Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001542-TA|BGIBMGA001542-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(470 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 73 4e-13
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 58 2e-08
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 54 2e-07
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 8e-07
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 52 1e-06
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 50 5e-06
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-05
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 45 2e-04
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 44 3e-04
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 42 8e-04
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 42 0.001
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 42 0.001
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 41 0.002
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 40 0.003
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 40 0.003
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.004
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.006
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.006
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 39 0.008
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.010
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 38 0.013
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 38 0.013
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.013
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 38 0.017
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.017
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 38 0.023
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.030
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.030
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.040
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 37 0.040
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.053
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.053
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.053
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.070
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 36 0.070
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.12
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.12
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 35 0.16
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.16
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 35 0.16
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.16
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.21
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 34 0.21
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.28
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 33 0.49
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.86
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 31 1.5
SB_30745| Best HMM Match : UIM (HMM E-Value=1.9) 31 1.5
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 30 4.6
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 30 4.6
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 29 6.1
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.1
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.1
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 73.3 bits (172), Expect = 4e-13
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 170 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQA 229
P VFV NLDYK + K+K+ FK AG V ++ D + S+G ++++ P+EA+ A
Sbjct: 182 PAASTVFVTNLDYKVNWQKLKDTFKCAGHVIRAEIMEDDEKKSKGMGTVQFETPMEAMNA 241
Query: 230 ISMFDKQMLYERRMTVRMDRGV--TDKGELRLPEGLKGIGMGLGPNGEPLRDVARNLP 285
+++ +ML +R + VRMDR L + + G G N PL A N P
Sbjct: 242 VNLLHGKMLMDRALRVRMDRAAPPVQNQMSNLATNAQQLLGGAGAN-NPLAAAAANNP 298
Score = 50.8 bits (116), Expect = 2e-06
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKAR 79
+FVSNIP+E RW LKD + VGDVA+ E+ D+ G+++
Sbjct: 95 VFVSNIPFESRWQNLKDHMNKVVGDVAFAEIFEDEKGRSK 134
Score = 49.6 bits (113), Expect = 5e-06
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEF-TNTEAMKKALFV 98
+FV+N+ Y+ W +LKD FK G V E++ DD K++G G V+F T EAM A+ +
Sbjct: 187 VFVTNLDYKVNWQKLKDTFK-CAGHVIRAEIMEDDEKKSKGMGTVQFETPMEAM-NAVNL 244
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLS 158
+H L R L ++ + N + G N P N
Sbjct: 245 LHGKMLMDRALRVRMD---RAAPPVQNQMSNLATNAQQLLGGAGANNPLAAAAANNPMAL 301
Query: 159 LQFLESINVQ 168
LQ L+S+ V+
Sbjct: 302 LQLLQSLQVR 311
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 57.6 bits (133), Expect = 2e-08
Identities = 48/208 (23%), Positives = 97/208 (46%), Gaps = 32/208 (15%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N + ++K++ E G + ++++TD GK++G G V F E ++A+ V+
Sbjct: 111 VYVKNFGDDMDDEQMKEICAE-AGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVL 169
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
+ E+ GR R+ R + R R + I K R+ E +N +
Sbjct: 170 NGKEIGGR------------RLWAGRAKKRAERAAEVKAE---IEKKRQ-ERINRF---- 209
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIE 219
+ +N+ ++ NLD D +++E F G + + + D GNS+GF +
Sbjct: 210 ---QGVNL--------YIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVC 258
Query: 220 YDHPVEAVQAISMFDKQMLYERRMTVRM 247
+ P EA +A++ + ++L + + V +
Sbjct: 259 FSSPEEATKAVTEMNGRILISKPLYVAL 286
Score = 53.6 bits (123), Expect = 3e-07
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 162 LESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 221
+E + QP V+V N D ++KE+ AGK+ ++ + D +G S+GF + ++
Sbjct: 98 IEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFE 157
Query: 222 HPVEAVQAISMFDKQMLYERRM 243
P EA +A+++ + + + RR+
Sbjct: 158 TPEEAEEAVNVLNGKEIGGRRL 179
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 54.4 bits (125), Expect = 2e-07
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+FV NIPYE +LK++F E VG V L+ D ++GK +G G E+ + E A+
Sbjct: 27 VFVGNIPYEASEEQLKEIFSE-VGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 99 MHRYELNGRKL 109
++ YELNGR L
Sbjct: 86 LNGYELNGRAL 96
Score = 46.0 bits (104), Expect = 7e-05
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAI 230
++ VFV N+ Y+A + ++KE+F G V + L D++ G +G+ EY A+ A+
Sbjct: 24 LRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAM 83
Query: 231 SMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNGEPL 277
+ L R +R+D ++K + + + P G+P+
Sbjct: 84 RNLNGYELNGR--ALRVDSAASEKNKEEIKSMEMTARPEVSPYGQPV 128
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 52.4 bits (120), Expect = 8e-07
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFVSN+P++ + +E+++LF K G V V L+T+ +GK +G G VE+ + A+ +
Sbjct: 173 LFVSNLPFDAKESEIEELFS-KHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTL 231
Query: 100 HRYELNGRKL 109
+ E+ GR +
Sbjct: 232 DKTEVKGRTI 241
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
+FV+NL + A +++I+E+F G V+ + L ++ G +G+ +EY+ A A+ D
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 235 KQMLYERRMTVRMDRGVTDKGELR 258
K + R ++V + T +G R
Sbjct: 233 KTEVKGRTISVALSNPPTRRGPPR 256
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 52.0 bits (119), Expect = 1e-06
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 170 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGN-SRGFAVIEYDHPVEAVQ 228
P K++VA+L ++ ++E+F + G+V+ +DL D+ N SRGFA +EY P E +
Sbjct: 1154 PKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEK 1213
Query: 229 AISMFD 234
A+ D
Sbjct: 1214 ALKHMD 1219
Score = 33.9 bits (74), Expect = 0.28
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGK-ARGCGIVEFTNTEAMKKALFV 98
L+V+++ ++++F G V V+L TD + +RG VE+ + E +KAL
Sbjct: 1159 LYVAHLTRNVNKDHVQEIFSV-YGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKH 1217
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPR 147
M +++G+++ ++ R RP +R R W + PR
Sbjct: 1218 MDGGQIDGQEIAVQSVL--PPRPRDVRPAYRRPSPPRRRPQQWRRSPPR 1264
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 49.6 bits (113), Expect = 5e-06
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+ V N+ +W ELK+ F G+V Y D + G G+VEFT E MK+A+ +
Sbjct: 104 VIVENLSTRAKWLELKE-FMNNAGEVCYA----DTHRRRPGEGVVEFTTEEDMKRAIASL 158
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPRE 148
+ E G+++ L++E SR + GR +R PR+
Sbjct: 159 DKCEFYGKRIRLRQELPRS-GTSKSRSRSPSGRKSRSRSPRKRSRSPRK 206
Score = 38.3 bits (85), Expect = 0.013
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
+V V NL +A ++KE AG+V D + G V+E+ + +AI+
Sbjct: 103 RVIVENLSTRAKWLELKEFMNNAGEVCYADTHRRRPGEG----VVEFTTEEDMKRAIASL 158
Query: 234 DKQMLYERRMTVRMD--RGVTDKGELRLPEGLK 264
DK Y +R+ +R + R T K R P G K
Sbjct: 159 DKCEFYGKRIRLRQELPRSGTSKSRSRSPSGRK 191
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 48.0 bits (109), Expect = 2e-05
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAIS 231
+K+++ NL++ +D+ +I++ F+ G V +D+ DK+ G SRGF + + AI
Sbjct: 9 RKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIE 67
Query: 232 MFDKQMLYERRMTV--RMDRGVTDKGELRLPEGLKGIGMGLGPNG 274
++ + R +TV +D+ G R G +G G G G G
Sbjct: 68 KMNQSSVGGRNITVALALDKTENRGGGGRRERGGRGGGGGYGGGG 112
Score = 32.7 bits (71), Expect = 0.65
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
L++ N+ + E++ F+E V V++L D +SG++RG G V + + + A+
Sbjct: 11 LYIGNLNFNSDEGEIEQAFEEF--GVEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 99 MHRYELNGRKLVL 111
M++ + GR + +
Sbjct: 69 MNQSSVGGRNITV 81
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 44.8 bits (101), Expect = 2e-04
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 150 ENLNTY-GLSLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK 208
E +N Y G SL ++ + + K+FV L Y+ + +KE F G++ +D+ +D
Sbjct: 5 EAVNGYIGTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDA 64
Query: 209 -DGNSRGFAVIEYDHPVEA 226
G RGFA +++ H EA
Sbjct: 65 LTGRPRGFAFVQFKHQSEA 83
Score = 32.7 bits (71), Expect = 0.65
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 172 VKKVFVANLDYKADQAKIKEVF-KMAGKVRNIDLAVDKDGN-SRGFAVIEYD 221
VKK+FV L + KI+E F K V+ I+ + N RGF + +D
Sbjct: 102 VKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFD 153
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 44.0 bits (99), Expect = 3e-04
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 44 NIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYE 103
N+ + +LKD ++ +GDV Y D + +G G++EF + +KKAL + E
Sbjct: 173 NVSLTYFVQDLKDYCRQ-IGDVTY----GDAHKQKQGEGVIEFATKKDLKKALRKLDGKE 227
Query: 104 LNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLN 153
L G+++ L + R SR + + ++ D + G + P + N+N
Sbjct: 228 LKGKRIRLIDSRSRSPRRSKSRSRSPSPKRDKVDDEARGGSPPPKEGNVN 277
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 42.3 bits (95), Expect = 8e-04
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
L+V ++ + +K +F E G V V+L+ D ++ +++G G V+F EA K+A+
Sbjct: 244 LYVGSLHFNITEAMVKAVF-EPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQ 302
Query: 99 MHRYELNGRKL 109
M+ +EL GR L
Sbjct: 303 MNGFELAGRPL 313
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 41.9 bits (94), Expect = 0.001
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
+++ NL D+A ++ +F GKV + + DKD NS+G + + Q I F+
Sbjct: 181 LYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDFN 240
Query: 235 KQML 238
K+ML
Sbjct: 241 KKML 244
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 41.5 bits (93), Expect = 0.001
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 42 VSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKAR-GCGIVEFTNTEAMKKALFVMH 100
+ N+ W +LKD F +VGDV Y D+ K R G G++EF+ +K+AL +
Sbjct: 101 IENLSSRVSWQDLKD-FCRQVGDVTY-----GDAHKQRQGEGVIEFSCKRDLKRALKKLD 154
Query: 101 RYELNGRKLVL 111
ELNG+++ L
Sbjct: 155 GEELNGKRIRL 165
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 40.7 bits (91), Expect = 0.002
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAI 230
+ K++V NL AD ++++ F+ G++ + +A N GFA +EY+ +A +A+
Sbjct: 2 MTTKLYVGNLGRNADSSELERAFEKFGRLSKVWVA----RNPPGFAFVEYEDYRDAEEAV 57
Query: 231 SMFDKQMLYERRMTVRM--DRGVTDKGELRLPEG 262
D + +R + V +RG D+G R P G
Sbjct: 58 RELDGANVCDRTIRVEFSNNRGGRDRGGGR-PRG 90
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 40.7 bits (91), Expect = 0.002
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 170 PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQ 228
P V+V NL Y + + +VF+ GKV + + DK+ SRG A I + A
Sbjct: 7 PSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQN 66
Query: 229 AISMFDKQMLYER--RMTVRMDRG 250
A++ +K+ ++ R + T+ D G
Sbjct: 67 AVAAVNKKQMFGRTIKCTIAKDNG 90
Score = 36.7 bits (81), Expect = 0.040
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
++V N+PY ++L +F E+ G V V +L D ++ ++RG + F + ++ + A+
Sbjct: 12 VYVGNLPYSLTNSDLHKVF-ERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAA 70
Query: 99 MHRYELNGRKL 109
+++ ++ GR +
Sbjct: 71 VNKKQMFGRTI 81
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 40.3 bits (90), Expect = 0.003
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
LFV N+P++ ++ D F+ G ++ L ++GCG +E ++ KAL +
Sbjct: 76 LFVGNLPFDLTTEKVLDHFR-CAGSSSFRLLTKKTDNSSKGCGFLEIDDSIGYTKALNLH 134
Query: 100 HRYELNGRKLVLKEETG 116
H Y L GRK+ ++ G
Sbjct: 135 HSY-LGGRKINVEVTCG 150
Score = 30.3 bits (65), Expect = 3.5
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
+FV NL + K+ + F+ AG L D +S+G +E D + +A+++
Sbjct: 76 LFVGNLPFDLTTEKVLDHFRCAGSSSFRLLTKKTDNSSKGCGFLEIDDSIGYTKALNL-H 134
Query: 235 KQMLYERRMTVRM---DRGVTDKGELRLPEGLK 264
L R++ V + G +DK + +L E K
Sbjct: 135 HSYLGGRKINVEVTCGGGGSSDKRKEKLQEKKK 167
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 40.3 bits (90), Expect = 0.003
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Query: 145 KPREPENLNTYGLSLQFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDL 204
KP + + L LSL ++N +V+V NL + + ++F G + ++DL
Sbjct: 234 KPSDTDRLTETTLSLMS-SNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDL 292
Query: 205 AVDKDGNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLK 264
++ G FA +E++ P +A A+ D R+ V RG + +G G
Sbjct: 293 K-NRRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGRGGGGGGGGGG 351
Query: 265 GIGMGLGPNG 274
G G G G G
Sbjct: 352 GGGGGGGGRG 361
Score = 29.5 bits (63), Expect = 6.1
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
++V N+P + R +L D+F K G +A V+ L + G VEF + + A+
Sbjct: 263 VYVGNLPQDVREKDLHDIF-YKYGHIADVD-LKNRRGAGPPFAFVEFEDPRDAEDAVKGR 320
Query: 100 HRYELNGRKLVLKEETGNERR 120
+E +G ++ ++ G R
Sbjct: 321 DGHEFDGYRIRVEFPRGGSGR 341
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 39.9 bits (89), Expect = 0.004
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+FV+N+ E L F GD+ Y+ + DD GK +EF T+A+ AL
Sbjct: 74 VFVNNLDPEITAEMLLSFFSS-CGDIKYIRMGGDD-GKPTRYAYIEFAETQAIVSALQYS 131
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHR-EGRNNRDDKDNWGINKPRE 148
G+ + + R SRP+ R GR+ +D + +PR+
Sbjct: 132 GAI-FGGKPIKSRSSRRRYRSRSDSRPRSRYRGRSRSRSRDRYRERRPRK 180
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 39.9 bits (89), Expect = 0.004
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 171 LVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQA 229
L+ +V+V +++++ + I+ F G + IDL+ D + +GFA +EYD P A A
Sbjct: 100 LMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLA 159
Query: 230 ISMFDKQMLYERRMTV 245
+ + +L R + V
Sbjct: 160 LEQMNGVLLGGRNIKV 175
Score = 33.9 bits (74), Expect = 0.28
Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKALFV 98
++++++ + ++K +F E G V + L + +GK +G G +E+ N ++ A+
Sbjct: 201 IYIASVHPDLLEDDIKSVF-EAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Query: 99 MHRYELNGRKL 109
M+ ++L G+ L
Sbjct: 260 MNLFDLGGQFL 270
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 39.5 bits (88), Expect = 0.006
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 12/201 (5%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDS-GKARGCGIVEFTNTEAMKKALFV 98
L+V NIP + E + F E G++ LL D S G +GCG V + + A+
Sbjct: 135 LYVCNIPKQLPEAEFRKAF-EAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISS 193
Query: 99 MHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKP--REPENLNTYG 156
+ G + L+ ++ RP + + I P R N G
Sbjct: 194 LSGTFFPGSTMGLQIRYADDNSAKV-RPPNNVPNFGQQMGGPGPIRPPANRFQARFNPMG 252
Query: 157 ---LSLQFLESIN---VQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KD 209
L Q + +N Q P ++V N+ Y A+Q I +F G V +D+ D +
Sbjct: 253 GGPLPQQKMTHMNGNKSQAPPGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQR 312
Query: 210 GNSRGFAVIEYDHPVEAVQAI 230
+GF + EA AI
Sbjct: 313 QQCKGFCFVTMATQEEAQNAI 333
Score = 39.5 bits (88), Expect = 0.006
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISMF 233
++V N+ + +A+ ++ F+ G + N L DK G +G + YD EA AIS
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
Query: 234 DKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGMGLGPNGEPLRDVA 281
M +++ + ++R P + G +G G P+R A
Sbjct: 195 SGTFFPGSTMGLQIRYADDNSAKVRPPNNVPNFGQQMGGPG-PIRPPA 241
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 39.5 bits (88), Expect = 0.006
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAISMF 233
VFV + D + D + FK R I + + K RG+A IEY+H + A
Sbjct: 8 VFVYSGDPQTDPNAYGDAFKTLFIGRIISMVYNSKASKPRGYAFIEYEHERDMHAAYKHA 67
Query: 234 DKQMLYERRMTVRMDRGVTDKG--ELRLPEGLKGIGMGLGPN 273
D + + RR+ V ++RG T K RL GL G G GP+
Sbjct: 68 DGKKIDGRRIVVDVERGRTVKSWRPRRLGGGLGGTRCG-GPD 108
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 39.1 bits (87), Expect = 0.008
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELL-TDDSGKARGCGIVEFTNTEAMKKALFV 98
+++ +IP+ F E+K F E+ G V + L + S +++G VEF E K A
Sbjct: 100 IYLGHIPHGFFENEIKKFF-EQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADT 158
Query: 99 MHRYELNGRKL 109
MH Y + GR L
Sbjct: 159 MHNYMMFGRLL 169
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 38.7 bits (86), Expect = 0.010
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGC-GIVEFTNTEAMKKALFV 98
L+V+N+ R +LK F + G V +++T+ C G+V T +E K +
Sbjct: 351 LWVANLSSITRAADLKTRFSQ-YGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKCIQH 409
Query: 99 MHRYELNGRKLVLKEETGN 117
+HR EL+GR + + G+
Sbjct: 410 LHRTELHGRAITVDRAKGD 428
Score = 29.1 bits (62), Expect = 8.1
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAIS 231
K ++VANL A +K F GKV + + K ++ F ++ EA + I
Sbjct: 349 KSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKCIQ 408
Query: 232 MFDKQMLYERRMTVRMDRG 250
+ L+ R +TV +G
Sbjct: 409 HLHRTELHGRAITVDRAKG 427
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 38.3 bits (85), Expect = 0.013
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
+F+ N+P++ L++LF G+V V L+ D +G +G G V F + +A+ AL
Sbjct: 58 VFIGNLPFDIEEEPLRELF-TTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFAL-K 115
Query: 99 MHRYELNGRKL 109
M+ E GRK+
Sbjct: 116 MNNAEFKGRKI 126
Score = 35.9 bits (79), Expect = 0.070
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAIS 231
+ VF+ NL + ++ ++E+F G V ++ L D K G +GF + ++ V A+
Sbjct: 56 RSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALK 115
Query: 232 M 232
M
Sbjct: 116 M 116
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 38.3 bits (85), Expect = 0.013
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 180 LDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMFDKQML 238
L + AD +K+VF GKV + L K +G +GFA IE++ +A + MF+++
Sbjct: 95 LPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFNRES- 153
Query: 239 YERRMTVRMDRGVTDKGELR 258
+ + + + + DK +++
Sbjct: 154 -KTKKEEKREPSIDDKTKIK 172
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 38.3 bits (85), Expect = 0.013
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAISMF 233
+FV N+ +A + I E+F G+++N+ + +D + G +G+A++EY+ EA A+
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 234 DKQMLYERRMTV 245
+ + + ++V
Sbjct: 355 NGAEMLGQNISV 366
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 37.9 bits (84), Expect = 0.017
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+ V N+ W +LKD F+ K G V Y D K G G+VEF + + + A+ +
Sbjct: 800 VIVENLSSRTSWQDLKDYFR-KYGKVTYA----DAHKKRIGEGVVEFESKDDLNTAIEKL 854
Query: 100 HRYELNGRKLVLKE 113
EL GR++ + E
Sbjct: 855 DDTELGGRRIRVYE 868
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 37.9 bits (84), Expect = 0.017
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKAL 96
LFV N+ + + ++ F+ G VA V +LTD ++GK++GCG+V+ + + K L
Sbjct: 321 LFVDNLSEDTKELDVLRYFRP-YGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKIL 377
Score = 33.9 bits (74), Expect = 0.28
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 150 ENLNTYGLSLQFLESINVQPPLVKK--VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD 207
EN GL ++ ++ N + V++ +FV NL + + F+ G+V + + D
Sbjct: 294 ENHTIKGLKVRTVQLPNEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTD 353
Query: 208 KD-GNSRGFAVIEYDHP 223
++ G S+G V++ HP
Sbjct: 354 RETGKSKGCGVVKLRHP 370
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD 209
KK+ V +LD+ +++E F+ G++ IDL ++ +
Sbjct: 236 KKLMVQDLDFDTTVDELREYFEKCGELTGIDLLINSE 272
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 37.5 bits (83), Expect = 0.023
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 169 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQ 228
PP +VFV + + ++ VF+ AG + + L +D +G +RG+A + Y +A +
Sbjct: 70 PPRGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFNGQNRGYAFVVYTSKDDAKR 129
Query: 229 AISMFDKQMLYERRMTVRMDRGVTDKGELRLPEGLKGIGM 268
+ + YE R + + L +P G+ G+ +
Sbjct: 130 CVKTLNN---YEIRKGKCIGVCSSVDKSLLVPTGMNGVDL 166
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 37.1 bits (82), Expect = 0.030
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKV-RNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISM 232
+F+ NLD + D+ + + F G + + + D D GNS+GFA I + + AI
Sbjct: 102 LFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEA 161
Query: 233 FDKQMLYERRMTVRMDRGVTDKGE 256
+ Q L R +TV KGE
Sbjct: 162 MNGQYLCNRPITVSYAFKKESKGE 185
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 37.1 bits (82), Expect = 0.030
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAM 92
+FV NI ++ R ELKD F GDV Y +++ D K R G ++ NTE +
Sbjct: 81 VFVGNIGFKVRARELKDFF-GYFGDVVYAQIIM-DRVKKRSKGTQDYRNTEIL 131
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 36.7 bits (81), Expect = 0.040
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFV 98
L V +PY +E+K+ F + G++ + E+ D ++ ++RG G V F E K L
Sbjct: 117 LIVLGLPYATTESEMKEYFT-RFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLST 175
Query: 99 MHRYE 103
HR +
Sbjct: 176 SHRIQ 180
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 36.7 bits (81), Expect = 0.040
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 169 PPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQ 228
P + +FV N++ +KE F+ G+V ID+ + K + +A +++ A+Q
Sbjct: 245 PGCTRTLFVGNIEKTTTYGDLKEAFERYGEV--IDVDIKKQPGNNPYAFVQFAELSSAIQ 302
Query: 229 AISMFDKQMLYERRMTV 245
A D++ + R+ V
Sbjct: 303 ARRKMDREYVGRNRVKV 319
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 36.3 bits (80), Expect = 0.053
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 167 VQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY----- 220
V P K+F+ L ++ ++KE+ G++R +L D G S+G+A EY
Sbjct: 667 VVPDSPHKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGI 726
Query: 221 -DHPVEAVQAISMFDKQMLYER 241
D ++ + + + DK+++ +R
Sbjct: 727 TDVAIQGLNGMQLGDKKLIVQR 748
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 36.3 bits (80), Expect = 0.053
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 196 AGKVRNIDLAVDKD-GNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMTVR 246
AG + N+ + DK+ G R F +E+ PV A + D LY+R + V+
Sbjct: 480 AGPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAINVK 531
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 36.3 bits (80), Expect = 0.053
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 186 QAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEAVQAISMFDKQMLYERRMT 244
Q IK++F G V + L D+ G S G+A + YD+P +A +A+ + L + +
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLK 99
Query: 245 VRMDR 249
V R
Sbjct: 100 VSFAR 104
Score = 36.3 bits (80), Expect = 0.053
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
L++S +P + + E++ LFK G + ++L D SG+ RG G V F + A+ +
Sbjct: 115 LYISGLPKDMKEEEVEALFKP-FGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDL 173
Query: 100 HRYELNGRKLVLKEETGN 117
+ L G + L + N
Sbjct: 174 NNKTLPGTNVKLTVKFAN 191
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 175 VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFD 234
++++ L + +++ +FK GK+ + D G RG + +D EA AI +
Sbjct: 115 LYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLN 174
Query: 235 KQML 238
+ L
Sbjct: 175 NKTL 178
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 35.9 bits (79), Expect = 0.070
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 30/193 (15%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+F+ N+ ++ L F+EK G A ++T + G++RG G +FT+ E KAL
Sbjct: 182 VFLGNLSFDADEETLAAFFEEK-GLSATCRVITQE-GRSRGFGYADFTSKEDYNKAL--- 236
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
ELNG ++ G E R++ + + G G N PR G
Sbjct: 237 ---ELNG-----EDCCGREIRINPANSKPSRG----------GGNTPR--GGGRGRGGRG 276
Query: 160 QFLESINVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD-GNSRGFAVI 218
F + PP + V NL Y + F+ N + D++ G SRGF +
Sbjct: 277 GFSGGRDQNPP-NSSLIVRNLSYDTTTDSLGAAFEGCS---NAKVIFDRESGESRGFGFV 332
Query: 219 EYDHPVEAVQAIS 231
+YD A + +S
Sbjct: 333 DYDDVETAKKVLS 345
Score = 33.1 bits (72), Expect = 0.49
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 74 DSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVL 111
+SG++RG G V++ + E KK L M E++GR++ L
Sbjct: 322 ESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRL 359
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 35.9 bits (79), Expect = 0.070
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVM 99
++ N+ Y L++ F DV V+++TD ++G+ RG G V F + E M+KA+
Sbjct: 8 YIGNLSYSVDEQALEEKFHGC--DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEF 65
Query: 100 HRYELNGRKLVLKE 113
+ +GR + + +
Sbjct: 66 DGQDFDGRPMKVNQ 79
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 35.1 bits (77), Expect = 0.12
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDD-SGKARGCGIVEFTNTEAMKKA 95
LFV N+P+EF T+ DL G++ + L+ + +G ++G G VE+ E +A
Sbjct: 115 LFVGNLPFEFTETQFGDLM-SPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQA 170
Score = 32.7 bits (71), Expect = 0.65
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 163 ESINVQP-PLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEY 220
+++NV P P +FV NL ++ + + ++ G + + L + G+S+G+ +EY
Sbjct: 102 KTLNVSPAPPESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEY 161
Query: 221 DHPVEAVQA 229
A+QA
Sbjct: 162 ATRENAMQA 170
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 173 KKVFVANL--DYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYDHPVEA 226
+ +FV L D+K + IKE+F G V +A++ +G SRGFA ++Y EA
Sbjct: 205 RTLFVDRLPRDFK-NGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEA 260
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 35.1 bits (77), Expect = 0.12
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 41 FVSNIPYEFRWTELKDLFKEKVGDVAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVM 99
++ N+ ++ +L+D F DV V++++D ++ + RG V F + + M+ A+ +
Sbjct: 233 YIGNLDFKVNEADLQDRFSRY--DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINEL 290
Query: 100 HRYELNGRKLVLKEETGNERR 120
E +GR + + + E+R
Sbjct: 291 DGQEFDGRSMKVNQARSREQR 311
Score = 33.1 bits (72), Expect = 0.49
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 42 VSNIPYEFRWTELKDLFKEKVGD-VAYVELLTD-DSGKARGCGIVEFTNTEAMKKALFVM 99
V++IP F +E LF + V+++TD ++G+ RG G V F + + M KA+
Sbjct: 11 VASIPLCFVESEADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKF 70
Query: 100 HRYELNGRKL-VLKEETGNER 119
+L+GR + V K + ER
Sbjct: 71 DGEDLDGRPMKVNKAQPRGER 91
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 34.7 bits (76), Expect = 0.16
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 172 VKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGNSRGFAVIEYD 221
++K+F+ L++ + +K+ F G + +D + K DG SRGF + Y+
Sbjct: 49 LRKIFIGGLNWNTTEEGLKDYFSQWGTI--VDCVIMKRDGRSRGFGFVTYE 97
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 34.7 bits (76), Expect = 0.16
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 53 ELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLK 112
+LK+ + KVG+V + D + +G G+VEF + MK AL + E G+++ LK
Sbjct: 127 DLKE-YMGKVGEVTFA----DAHKRRQGEGVVEFATKDDMKTALKKLDDTEFFGKRIRLK 181
Query: 113 EETGNERRMHTSRPQHREGRNNRDDKDNWGINKPRE 148
+ G + R ++ +++ G + +E
Sbjct: 182 IKDGEGDALMEDREDDQKDAEEKEEVAEAGAEEQQE 217
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 34.7 bits (76), Expect = 0.16
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 54 LKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKL---V 110
L +LF K G V V +L D+SGK+R G V F +++ + A M+ ++ G+ +
Sbjct: 540 LLELFN-KFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMNGCDILGKIVETKY 598
Query: 111 LKEETGNERRMH 122
KE T N ++H
Sbjct: 599 AKEVTTNYSKVH 610
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 34.7 bits (76), Expect = 0.16
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 100 HRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKPREPENLNTYGLSL 159
H+ + N L +E G E T+ ++R+ ++ D D + + +N N
Sbjct: 338 HKKDYNSNTLQ-DDEKGGEDSEGTTEHKNRDDDDDDSDDDE-DVKHMSKDDNNNEKSDED 395
Query: 160 QFLESIN----VQPPLVKK---VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDK-DGN 211
E N +P VK+ VF+ NL + + Q I +FK G + + VD +
Sbjct: 396 DASEDDNHSQRSKPSDVKEGLTVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQH 455
Query: 212 SRGFAVIEYDHPVEAVQAISMFDK 235
S+G A ++Y Q ++ D+
Sbjct: 456 SKGSAFVKYRSAESVTQCLAATDE 479
Score = 33.9 bits (74), Expect = 0.28
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 170 PLVKK--VFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNS--RGFAVIEYDHPVE 225
P++ K +FV NL Y A+ K F+ G ++ + DKD + RGF + + +
Sbjct: 15 PVISKTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEED 74
Query: 226 AVQA 229
A++A
Sbjct: 75 ALKA 78
Score = 31.9 bits (69), Expect = 1.1
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDV--AYVELLTDDSGKARGCGIVEFTNTEAMKKALF 97
+FV N+PY E K F E++G + ++ D+ + RG G V F E KA
Sbjct: 22 IFVRNLPYNITDAEFKSAF-EEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAKD 80
Query: 98 VMHRYELNGRKLVLKEETGNERRMHTSRPQHREGRNNRDDKD 139
+ + GR + L +E++ T +P REG N K+
Sbjct: 81 NIK--SIKGRPIHL---DFSEKKART-KP-GREGTENASQKE 115
Score = 30.3 bits (65), Expect = 3.5
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDG---NSRGFAVIEYDHPVEAVQAI 230
++ + NL + +A +KE F G+V + K G GF +++ + +A +A+
Sbjct: 248 RLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKAL 307
Query: 231 SMFDKQMLYERRMTV 245
+ + + R + V
Sbjct: 308 EEMNAKKILGRPVAV 322
>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 34.3 bits (75), Expect = 0.21
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGK--VRN---IDLAVDKDGNSRGFAVIEYDHPVEAV 227
K+ +V NL KA + + F + +R+ ++LAV+K G S GF + P
Sbjct: 5 KRFYVGNLSVKATREDLSHHFGLDATPYLRSSCWVELAVEKSGKSLGFGFVNV--PKHLA 62
Query: 228 QAISMFDKQMLYERRMTVRMDRG 250
+ ++ L+++R+T+ RG
Sbjct: 63 DHLMHLNQTKLFDKRITIEPARG 85
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 34.3 bits (75), Expect = 0.21
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 68 VELLTD-DSGKARGCGIVEFTNTEAMKKALFVMHRYELNGRKLVLKE 113
V ++TD ++G+ RG G V F + E M+KA+ +L+GR + + E
Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNE 171
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 33.9 bits (74), Expect = 0.28
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 168 QPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAV 227
+P + VF+ L ++ I E+F + G++ +I ++ K N+R F + + E+V
Sbjct: 346 KPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENARKFCHLRFG-AKESV 404
Query: 228 QAISMFDKQMLYER 241
+F LY R
Sbjct: 405 DTAVLFSGYRLYTR 418
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 33.5 bits (73), Expect = 0.37
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 40 LFVSNIPYEFRWTELKDLFKEK---VGDVAYV-----ELLTDDSGKARGCGIVEFTNTEA 91
++ N+P++ ELK +F+ + V DV V E ++RG G V F N E
Sbjct: 52 VYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPED 111
Query: 92 MKKALFVMHRYELNGRKL 109
+ A+ ++ E+ GR L
Sbjct: 112 AQTAVKSLNGKEVQGRTL 129
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 33.1 bits (72), Expect = 0.49
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYD 221
K++FV + + +++++ F+ G V+ + DK G S+G+A I ++
Sbjct: 8 KRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFE 56
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 32.3 bits (70), Expect = 0.86
Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 173 KKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKD----GNSRGFAVIEYDHPVEAVQ 228
+K+++ NLD + + I ++ + G++ + + G RG+ +E+ +A +
Sbjct: 387 RKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARK 446
Query: 229 AISMFDKQMLYERRMTV 245
A+ +K+++ R + V
Sbjct: 447 ALRGLNKKIVLSRALVV 463
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 31.5 bits (68), Expect = 1.5
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 166 NVQPPLVKKVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPV 224
+++PP +FV L+ ++ +F G + + ++ D K G S +A IE++
Sbjct: 114 DIKPP-DNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDE 172
Query: 225 EAVQAISMFDKQMLYERRMTVRMDRGVT 252
+ +A D ++ +RR+ V + V+
Sbjct: 173 DCERAYFKMDNVLIDDRRIHVDFSQSVS 200
>SB_30745| Best HMM Match : UIM (HMM E-Value=1.9)
Length = 116
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 40 LFVSNIPYEFRWTELKD 56
+FVSNIP+E RW LKD
Sbjct: 95 VFVSNIPFESRWQNLKD 111
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 176 FVANLDYKADQAKIKEVFKMAGKVRNIDLAVD-KDGNSRGFAVIEYDHPVEAVQAISMFD 234
+V L + D+ + F G + ++ + +D RGF +E++ + AI +
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 235 KQMLYERRMTVRM 247
+ L+ R + V +
Sbjct: 68 ESELFGRTIRVNL 80
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSGKARGCGIVEFTNTEAMKKALFVM 99
+++ + + R + L+ +F G + + ++ +GK++G G V + N E+ ++AL
Sbjct: 65 IYIRDFRPDIRKSSLESVFGP-YGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRALAGT 123
Query: 100 H 100
H
Sbjct: 124 H 124
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 29.5 bits (63), Expect = 6.1
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 40 LFVSNIPYEFRWTELKDLFKEKVGDVAYVELLTDDSG 76
L V+NIP+ FR +L+ +F G +A VE++ ++ G
Sbjct: 70 LHVTNIPFRFRDNDLRQMF-GSFGVIADVEIIYNERG 105
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 8.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 376 NVNQAASLGIGNNEMNSNVLTSGVMGGNQMNSGPLSNISGTSRPLGVSVPNQGYGRDTG 434
N N + GI NN N+N SG G N+G +N +GTS N G + G
Sbjct: 358 NKNNNYNSGINNN--NNNNYNSGSSNGRNTNNGN-NNNAGTSNVGNNGFTNNGVNNNNG 413
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.1 bits (62), Expect = 8.1
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 174 KVFVANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMF 233
++FV NL D+ ++KE+FK G+V ++ ++K+ +GF I D + A A +
Sbjct: 54 RLFVGNL-IDCDEEEMKEMFKKYGEV--AEVFINKE---KGFGFIRLDTRLHAEAAKAGL 107
Query: 234 DKQMLYERRMTVR 246
D R + VR
Sbjct: 108 DMATRKGRTLRVR 120
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 177 VANLDYKADQAKIKEVFKMAGKVRNIDLAVDKDGNSRGFAVIEYDHPVEAVQAISMFDKQ 236
V NLD +++ F G V + D G S+G ++E+ A A+ +
Sbjct: 130 VKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRSKGHGIVEFSRKNNAHNAMQKISES 189
Query: 237 M 237
+
Sbjct: 190 L 190
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,402,963
Number of Sequences: 59808
Number of extensions: 495997
Number of successful extensions: 1098
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 109
length of query: 470
length of database: 16,821,457
effective HSP length: 85
effective length of query: 385
effective length of database: 11,737,777
effective search space: 4519044145
effective search space used: 4519044145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)
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