Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001542-TA|BGIBMGA001542-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (470 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    26   0.78 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   2.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   9.6  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 105 NGRKLVLKEETGNER-RMHTSRPQHREGR---NNRDDKDNWGINKPREP--ENLNTYGLS 158
           N R+     ET  ER R  T R + +E +   NN    +N+  N        N NT    
Sbjct: 52  NKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKK 111

Query: 159 LQFLESINV-QPPLVKKVFVAN 179
           LQ+   IN+ Q P+   ++  N
Sbjct: 112 LQYYNIINIEQIPVPVPIYCGN 133


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 107 RKLVLKEETGNERRMHTS--RPQHREGRNNRDDKDNWGINKP 146
           R+  L+ E GN R ++ S  RP H   R   + +   G N+P
Sbjct: 89  REAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRP 130



 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 107 RKLVLKEETGNERRMHTS--RPQHREGRNNRDDKDNWGINKP 146
           R+  L+ E GN R ++ S  RP H   R   + +   G N+P
Sbjct: 145 REAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRP 186


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 107 RKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKP 146
           R+   + E GN R ++  +P+    R  R+ +   G N+P
Sbjct: 90  REAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 129


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,565
Number of Sequences: 429
Number of extensions: 4336
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 470
length of database: 140,377
effective HSP length: 60
effective length of query: 410
effective length of database: 114,637
effective search space: 47001170
effective search space used: 47001170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)